PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_386343EA1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 252aa MW: 28031.4 Da PI: 9.8331 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 94.9 | 8.5e-30 | 2 | 97 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +rlws De+++L+Gl +++ak g+ +++di ++++ ++ ++s++vs++ql++K+rrLK+K++ ++ak+g+e++++++hd++i+e+ Traes_5DL_386343EA1.1 2 SRLWSHGDELLILRGLATYRAKSGVlpGSTNDIGKLHSHIRAQLSVRVSTTQLSDKVRRLKQKYQLLATRAKNGREQELHTPHDRSIYEH 91 69***********************877888*********************************************************** PP DUF573 92 skkiWg 97 +kk+Wg Traes_5DL_386343EA1.1 92 AKKVWG 97 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-26 | 2 | 97 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
PSRLWSHGDE LLILRGLATY RAKSGVLPGS TNDIGKLHSH IRAQLSVRVS TTQLSDKVRR 60 LKQKYQLLAT RAKNGREQEL HTPHDRSIYE HAKKVWGLVG SGGGDGGGSG YENYGGGDSD 120 ELQYSGDSDD DMESQRDDRY HIKNRKVRPI TAANGNGIGL GAVNANGRGK SGLEKGKDAY 180 PYLWETVEEL SKEHPSGAAF KKAFEVLEGS KARAIEEKLR RFRLTEIRQQ LRRMDLMKET 240 VRMVLDALES AD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370590 | 0.0 | AK370590.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112N22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169455.1 | 0.0 | STOREKEEPER protein-like | ||||
TrEMBL | A0A3B6MSE7 | 0.0 | A0A3B6MSE7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453KYU8 | 0.0 | A0A453KYU8_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_55076.1 | 0.0 | (Hordeum vulgare) | ||||
STRING | Traes_5DL_386343EA1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2671 | 35 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 2e-15 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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