PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_34CCC8525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 141aa MW: 16182.5 Da PI: 8.9995 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.6 | 7.3e-12 | 17 | 96 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e GF +r ks+ + n + +++ vC + gk+ e+++ + r++C +++ ++kd+ w++++ + HnH+l+ Traes_5DL_34CCC8525.1 17 DFYNLYSWEKGFGIRYGKSRLN-VNMSKCMQEIVCGCAGKPIVENTR---------SCRCECPSLIRLLRTKDNGWYIAEHRDGHNHALS 96 6*****************9998.666688999*******99887555.........99******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-8 | 17 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MVPKIGTSFD TLGEAYDFYN LYSWEKGFGI RYGKSRLNVN MSKCMQEIVC GCAGKPIVEN 60 TRSCRCECPS LIRLLRTKDN GWYIAEHRDG HNHALSQTYG QTIHWPSHKH IDVYSKDLVK 120 QLRQNNVNLS KVYSIIGSFF G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX295577 | 1e-135 | JX295577.2 Aegilops tauschii chromosome 1Ds prolamin gene locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196226.1 | 5e-83 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A453G8B5 | 1e-100 | A0A453G8B5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_34CCC8525.1 | 1e-103 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-10 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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