PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_32D78D06A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 105aa MW: 11810.2 Da PI: 9.5671 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 46 | 105 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +C+vkkkv+rsaed +vve tYegeHnh+ Traes_5DL_32D78D06A.1 46 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCRVKKKVQRSAEDSSVVEATYEGEHNHP 105 58***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.453 | 41 | 105 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-28 | 41 | 105 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-25 | 42 | 105 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.9E-31 | 46 | 105 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-25 | 47 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
ISNRNVGTGE AEHVDVDSPL SNGTCRRIKV KKVCTRIDPS DTSLVVKDGY QWRKYGQKVT 60 RDNPSPRAYF RCAFAPSCRV KKKVQRSAED SSVVEATYEG EHNHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-19 | 45 | 104 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-19 | 45 | 104 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21961049}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}. | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX424311 | 1e-152 | JX424311.1 Triticum monococcum WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147443.1 | 7e-72 | WRKY transcription factor WRKY76-like | ||||
Swissprot | Q6EPZ2 | 2e-52 | WRK76_ORYSJ; WRKY transcription factor WRKY76 | ||||
Swissprot | Q6IEK5 | 1e-52 | WRK76_ORYSI; WRKY transcription factor WRKY76 | ||||
TrEMBL | A0A453KX94 | 2e-71 | A0A453KX94_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QZ98 | 6e-71 | N1QZ98_AEGTA; Putative WRKY transcription factor 40 | ||||
STRING | EMT16727 | 9e-72 | (Aegilops tauschii) | ||||
STRING | Traes_5DL_32D78D06A.1 | 6e-73 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6660 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-41 | WRKY DNA-binding protein 40 |