PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_09F1F8F79.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 334aa    MW: 35781.4 Da    PI: 7.2104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_09F1F8F79.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.63.8e-21130194359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 
                            Dgy+WrKYGqK+++ +++pr+YYrCt +   gCp+k+ v+r+++d++       +++Y +eH ++
  Traes_5DL_09F1F8F79.1 130 DGYQWRKYGQKQIEAAKHPRNYYRCTNStnqGCPAKRTVQRNDDDGSdhgrpRYTVVYISEHSCK 194
                            9************************9888889***********9987333335789999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-23115195IPR003657WRKY domain
SuperFamilySSF1182901.06E-20122195IPR003657WRKY domain
SMARTSM007741.7E-27128195IPR003657WRKY domain
PROSITE profilePS5081119.141130174IPR003657WRKY domain
PfamPF031065.8E-22130194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQRSRGCAPG GEHGWAAADG GMQLQRRERE LVAQLHELLF PSTSSGASSC SGLAADLYWE  60
HGSPQVKATA SCGGGKRRGG RKRVREDERH EEGQGQRGGA ATATKATTRC RRKKQGATTT  120
TLVTTVPDFD GYQWRKYGQK QIEAAKHPRN YYRCTNSTNQ GCPAKRTVQR NDDDGSDHGR  180
PRYTVVYISE HSCKATESAA VPVILETTVR TDTAAAPDVA VVPGSSSGAI SSETQSPASS  240
SDITWSSGGS DGGANVPPRE RDDYSRLFAI EDDCWGWNAS PPAPAAAAAL LQEMDFDGPI  300
RSPVHVAAAD GSWISDLFVN EPPFVLNSCH LFGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-151301941069OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6696621e-180EU669662.1 Triticum aestivum WRKY32 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196414.10.0WRKY transcription factor 22-like
TrEMBLA0A3B6MP230.0A0A3B6MP23_WHEAT; Uncharacterized protein
STRINGTraes_5DL_09F1F8F79.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.23e-14WRKY DNA-binding protein 67
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]