PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_0924913F8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 341aa    MW: 38260.8 Da    PI: 5.9406
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_0924913F8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.6e-50361682128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg 
  Traes_5DL_0924913F8.1  36 LPGYRFHPTDEELVTFYLRRKVARKSLRI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGI 122
                            69***************************.99***************445556889******************************** PP

                    NAM  89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            d++++s+      +g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Traes_5DL_0924913F8.1 123 DRPIYSAgsggasSGVSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 168
                            ******98877766667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5534193IPR003441NAC domain
PROSITE profilePS5100554.23735194IPR003441NAC domain
PfamPF023651.3E-2437168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVAKAEMSAM ELEKVMSDGE VVLGGAGDEE EEDVVLPGYR FHPTDEELVT FYLRRKVARK  60
SLRIEVIREM DIYKHDPWDL PKASTVGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPIYSAG SGGASSGVSI GLKKSLVYYR GSAGKGTKTD WMMHEFRLPP AAATNSSPSM  180
QEAEVWTICR IFRRTITYRK QQTWRPVPAP SVADSNSNTG SFESSEAGDE YMNCLQAPAA  240
PCIPQQQYVS QVGTVDSGNF FYEDNMHNQQ FQGQWNAAPA APVPEQKLQS PLSTAVSFHQ  300
NDHSHAVAAN DFYKVEGYLE EIARMMEVTD PTGFYDYRSY G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-483720019171NO APICAL MERISTEM PROTEIN
1ut4_B4e-483720019171NO APICAL MERISTEM PROTEIN
1ut7_A4e-483720019171NO APICAL MERISTEM PROTEIN
1ut7_B4e-483720019171NO APICAL MERISTEM PROTEIN
4dul_A4e-483720019171NAC domain-containing protein 19
4dul_B4e-483720019171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3604320.0AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195561.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A453LXW00.0A0A453LXW0_AEGTS; Uncharacterized protein
STRINGEMT069920.0(Aegilops tauschii)
STRINGTraes_5DL_0924913F8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-80NAC domain containing protein 42
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]