PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_04FB2797F.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 454aa    MW: 49563 Da    PI: 10.3739
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_04FB2797F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.51.3e-11116150135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C++ +Tp+ R+gp g  tLCnaCG+ y k+g+
  Traes_5DL_04FB2797F.2 116 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 150
                            99******************************997 PP
2GATA32.61.1e-10208242135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +Cg+++ plW +g+ g +++C aCG++y+k +l
  Traes_5DL_04FB2797F.2 208 CLHCGSSEPPLWIEGSMGRREVCTACGMRYKKGRL 242
                            99******************************986 PP
3GATA55.29.7e-18312346135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cg+++Tp+WR+gp g  tLCnaCG++yr  +l
  Traes_5DL_04FB2797F.2 312 CQHCGSSETPQWREGPKGRATLCNACGVRYRQGRL 346
                            *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.275110149IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-8110164IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-10113152No hitNo description
Gene3DG3DSA:3.30.50.102.2E-11114156IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.76E-8115160No hitNo description
PfamPF003201.3E-8116150IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-6202252IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.673202238IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.4E-8203240IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-7204242No hitNo description
CDDcd002021.70E-6207251No hitNo description
PfamPF003202.7E-9208242IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-14304367No hitNo description
SMARTSM004012.9E-17306360IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.756306342IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-14310344IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.70E-13311358No hitNo description
PROSITE patternPS003440312337IPR000679Zinc finger, GATA-type
PfamPF003209.6E-16312346IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
GDPRHGRGRR RWGEGGWRHG APAPVRPRSP RNGAPRRRLP PGGRRPAEGA QLPPPQRPVG  60
LVVTQDPLHP AAXLPPAGDP ANEEEGRRFP RPQRVQVAPS LDPGTADKPP KRLKRCLHCK  120
AVETPQRRSG PMGRGTLCNA CGVWYSKNGT LPEHRPVASP IVDSPLENPI WEPEVPGAIY  180
LVRKSATERM PPRTEAAPAP APRPGTSCLH CGSSEPPLWI EGSMGRREVC TACGMRYKKG  240
RLLPECRPAE CSVTDSRQES PVINSPPESP IWEPEAPSSV HLPRKPSKKK KRRRPRSEAP  300
SAPWPANKGK RCQHCGSSET PQWREGPKGR ATLCNACGVR YRQGRLLPEY RPVASPTFVP  360
TKHANTHRKV LQLHRTRQSN DEHPSPLPAD SVTNLPPIRN ELPTTSTAGL ASEDPTDAPG  420
YTDNPINVPS SLDSLLLDGP SAPLIVESED FAIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292KKKKRR
2287293KKKKRRR
3288293KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550520.0AK355052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152088.10.0uncharacterized protein LOC109737355 isoform X1
RefseqXP_020152090.10.0uncharacterized protein LOC109737355 isoform X2
TrEMBLA0A3B6MPX00.0A0A3B6MPX0_WHEAT; Uncharacterized protein
TrEMBLA0A453K8N80.0A0A453K8N8_AEGTS; Uncharacterized protein
STRINGTraes_5DL_04FB2797F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-30GATA transcription factor 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]