PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_D1C03C165.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28894.1 Da PI: 10.4145 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 81 | 126 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Traes_5BS_D1C03C165.2 81 RGRMTPHEERLILELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 126 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 61 | 75 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 61 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.53E-22 | 61 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.955 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 81 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.12E-13 | 83 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 89 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
EAKVIRPLGN KGQLPSLPTS FILLLPNRLE FIKDLVLKLE PTSTQRKKSK KTGSQPIQGL 60 NRTGKSCRLR WVNYLHPGLK RGRMTPHEER LILELHARWG NRWSRIARKL PGRTDNEIKN 120 YWRTHMRKKA QERKRNMSPS SSSSSVTYQS IQPQTPSIMG IGEQELHGGS SCITSILKGT 180 PADMDGYLMD QIWMEIEAPS GVNFHDGKDN SYSSPSGPLL PSPMWDYYSP EAGWKMDEIK 240 MAPQVSYSKG IGPSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-18 | 62 | 130 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009536 | 0.0 | BT009536.1 Triticum aestivum clone wr1.pk0139.g11:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201687.1 | 1e-145 | myb-related protein MYBAS2-like isoform X1 | ||||
Swissprot | Q4JL76 | 1e-101 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | M8CY53 | 1e-160 | M8CY53_AEGTA; Myb-related protein MYBAS2 | ||||
STRING | Traes_5BS_D1C03C165.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 6e-51 | myb domain protein 59 |
Publications ? help Back to Top | |||
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