PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_BE6397B54.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 550aa    MW: 62651.1 Da    PI: 8.3034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_BE6397B54.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.1e-14511321098
                            HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            ++++  l +p kf+++++g+   s  ++le ++g+ ++v+    k  +++vl++GW  Fv+  +Lk+g  +vF+++g+s f  +v +f
  Traes_5BS_BE6397B54.2  51 NFQE-KLAIPQKFVQNFKGQ--ISEVIKLEAPDGNIYNVQA--IKDLNKIVLGSGWGVFVRFYELKAGYLLVFRYIGDSHF--KVLIF 131
                            4444.499******888888..7779***************..999999****************************9999..88777 PP

                            - CS
                     B3  98 r 98 
                            +
  Traes_5BS_BE6397B54.2 132 D 132
                            5 PP
2B348.22e-152122911499
                            T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            + + +p kf++++ g    sk ++le ++g+++++++  ++  ++++l++GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  Traes_5BS_BE6397B54.2 212 HEMNIPEKFVNNFRGR--ISKVMKLEAPDGNVYNIQV--TNDLNKITLRSGWAAFASAYELKEHDLLVFSYTGNSHF--KVLIFDP 291
                            5699******888766..7899***************..**********************************9999..9999885 PP
3B337.15.4e-12413496994
                            HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                     B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                             +l sg lv+ k++a+++   + +   +tl + ++++ W  +l+++  ++  +l++GW++F+  n+L+e D++vF+++++  e ++vv
  Traes_5BS_BE6397B54.2 413 TSL-SGSLVICKDYAAKYLRHEDQ--FITLCHpRKSNIWLDNLKVTADGS-GMLSAGWSSFALHNELRESDVCVFEVSKSaGEMTMVV 496
                            334.466***********544334..57777747779**99996655544.58***********************887544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-2137136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1938132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.72941134IPR003340B3 DNA binding domain
CDDcd100177.88E-1942132No hitNo description
SMARTSM010192.7E-844134IPR003340B3 DNA binding domain
PfamPF023622.6E-1245131IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-21195294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-19196294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.406199292IPR003340B3 DNA binding domain
CDDcd100175.89E-17200290No hitNo description
SMARTSM010191.4E-5202292IPR003340B3 DNA binding domain
PfamPF023626.7E-13212290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-16401497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-17403499IPR015300DNA-binding pseudobarrel domain
CDDcd100175.36E-9404498No hitNo description
PROSITE profilePS5086310.898404500IPR003340B3 DNA binding domain
SMARTSM010190.0026407500IPR003340B3 DNA binding domain
PfamPF023622.2E-9412497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAPDQDHEQG NRSGHSISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKLAIPQ  60
KFVQNFKGQI SEVIKLEAPD GNIYNVQAIK DLNKIVLGSG WGVFVRFYEL KAGYLLVFRY  120
IGDSHFKVLI FDFASCCEKE VFHVLMNCGP NAQEKDTHLE RSLLGERRCQ NGGSSNSESH  180
RRCEHCNVHF YWHHMDDRQK HFLRFMVGDF CHEMNIPEKF VNNFRGRISK VMKLEAPDGN  240
VYNIQVTNDL NKITLRSGWA AFASAYELKE HDLLVFSYTG NSHFKVLIFD PSGCEKELFR  300
IVMNHTPNVQ KRGISHDQLF LKETRRRDGG SRDNNPRKTK KMTLLDSPSP KSAEGVTSPE  360
DTMKSGGPPE TTEPRYVLAT GCNLTTAQKA QIDALVKKVR PVIPFYITAM NKTSLSGSLV  420
ICKDYAAKYL RHEDQFITLC HPRKSNIWLD NLKVTADGSG MLSAGWSSFA LHNELRESDV  480
CVFEVSKSAG EMTMVVHSLE GGHHLRGKEP ESQNKCDYPV KGKAIKEAES DHKHAESKSN  540
YYYSKYAKGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A3B6LGX60.0A0A3B6LGX6_WHEAT; Uncharacterized protein
STRINGTraes_5BS_BE6397B54.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-21B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]