PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_BC15EF87A.1 | ||||||||
Common Name | WM31B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 87aa MW: 9620.04 Da PI: 9.3054 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n +nrqvtfskRr g++KKA EL +LCda+ a+iifsstg+ly ++s Traes_5BS_BC15EF87A.1 9 ERIDNATNRQVTFSKRRGGLMKKARELAILCDADLALIIFSSTGRLYNFAS 59 69***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.174 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.08E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 6.93E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MGRGKIAIER IDNATNRQVT FSKRRGGLMK KARELAILCD ADLALIIFSS TGRLYNFASS 60 SGMEAILERY QEAKQEHCGV LNPTSEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-24 | 1 | 77 | 1 | 76 | MEF2C |
5f28_B | 5e-24 | 1 | 77 | 1 | 76 | MEF2C |
5f28_C | 5e-24 | 1 | 77 | 1 | 76 | MEF2C |
5f28_D | 5e-24 | 1 | 77 | 1 | 76 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502902 | 1e-144 | AM502902.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31B (WM31B gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171925.1 | 6e-57 | MADS-box transcription factor 25-like | ||||
Swissprot | Q84NC5 | 1e-44 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A446TS29 | 3e-57 | A0A446TS29_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446TS54 | 8e-57 | A0A446TS54_TRITD; Uncharacterized protein | ||||
TrEMBL | A9J232 | 8e-57 | A9J232_WHEAT; MIKC-type MADS-box transcription factor WM31B | ||||
STRING | Traes_5BS_BC15EF87A.1 | 4e-58 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 4e-28 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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