PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_B7F04C1A5.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 289aa    MW: 32545.9 Da    PI: 9.6794
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_B7F04C1A5.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.96.5e-13202281190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e+GF +r  ks+ + + +    ++ vC ++gk++ e+++         +  ++C a +++ + +d+ w++t+ +  HnH+
  Traes_5BS_B7F04C1A5.4 202 DFYNLYSWEIGFGIRYGKSRLNAERT-KSIQEIVCGCSGKPDAENSR---------SCMCECPALIRLLRASDNSWYITEHRASHNHS 279
                            6*****************99995544.67789********9997665.........899****************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_5BS_B7F04C1A5.4 280 MS 281
                            85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-9202281IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
NRKEISLSVV HSRGPSPPSK KKRRRVRRGC CRGWRRRCRR RCLTVKLGAD GHRGNGIPTG  60
CGRQRFPVWE EFADNLDHID PVPMMYLLDN GAANQDIRQG DVDSGITEMV CDGVLTDAQV  120
GGQRRRDESP TRSAQSTGRV NPQAPGWTKR LRLGSVPPDR VPCPSRMSAL ELSMRKYAEQ  180
PDKNVVRPEL GLSFDSLGEA YDFYNLYSWE IGFGIRYGKS RLNAERTKSI QEIVCGCSGK  240
PDAENSRSCM CECPALIRLL RASDNSWYIT EHRASHNHSM SLTMGEKVH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKKRRR
21927KKKRRRVRR
32036KKRRRVRRGCCRGWRRR
42125KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156512.11e-136protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A1D5URD41e-133A0A1D5URD4_WHEAT; Uncharacterized protein
STRINGTraes_5BS_B7F04C1A5.40.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-10FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]