PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_AF63E8E5C.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 603aa MW: 68143.1 Da PI: 5.2727 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 571 | 590 | 3 | 22 |
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg +F ++s L +H+ Traes_5BS_AF63E8E5C.2 571 CETCGDTFESRSKLFSHLEE 590 *****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 7.5E-22 | 5 | 79 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 4.71E-22 | 5 | 110 | IPR001623 | DnaJ domain |
SMART | SM00271 | 3.6E-20 | 8 | 69 | IPR001623 | DnaJ domain |
CDD | cd06257 | 7.12E-17 | 9 | 66 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 17.923 | 9 | 77 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 4.0E-19 | 10 | 74 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.1E-11 | 11 | 29 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.1E-11 | 29 | 44 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.1E-11 | 49 | 69 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 54 | 73 | IPR018253 | DnaJ domain, conserved site |
SMART | SM00451 | 4.3E-6 | 298 | 332 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 1.98E-12 | 298 | 343 | No hit | No description |
SMART | SM00355 | 3.4 | 301 | 325 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.2E-10 | 301 | 326 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 303 | 325 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.1 | 569 | 593 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 569 | 598 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 571 | 593 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MASAAPKRCY YEILGLPRDC SPTDIKLAFR RLALTLHPDK QAPGSDVAAA TAAFQELQHA 60 HSVLSDPQER AYYDSHRSQI LFADPVSSRS GTASSSPVPD LFSFFSTSAF SGFSDSGRGF 120 YKVYGDVFDK VYAQEVAYAR RMGIPTDSIP TPPVIGNLDS PYTQVTAFYS YWLGFGSVMD 180 FGWAAEWDAS RGENRRVRRL MEEDNKKAMR KARREYNDAV RGLAAFCKKR DKRVVDMALR 240 KKAEEEKKKK EEMERKKAEE KKKKERAMAY QEPEWARVDE IELAFEEEDD EETREKAKEE 300 LYCVACNKKF KSEKQWKNHE QSRKHKDKVA DLRMAFKEEE EALKEAEEEA GGEWEEVDVG 360 FDFKPANESE ESDWSDAAEE LAEELDKGLE VADQDNGNKD FNNGEQEVGS YDETSVLEAM 420 LSSRKNKKSG YVVPQEEAPS VVTKDDNSED RNSEVRSVKK KGRRRRASKK GQDEGSYADS 480 GHGMKNDVPY EESVHDNDEN DADDKAEGPP SSNDDGTSAS VGDQQNEKTD NPKNNKKNKK 540 GAEKKTTVSA DLKITSKGKK QKEVSKARND CETCGDTFES RSKLFSHLEE TGHAVIKGRQ 600 KKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 247 | 263 | KKKEEMERKKAEEKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252648 | 0.0 | AK252648.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf165o10, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193900.1 | 0.0 | DNAJ protein JJJ1 homolog | ||||
TrEMBL | A0A3B6LIP8 | 0.0 | A0A3B6LIP8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446U0N9 | 0.0 | A0A446U0N9_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BS_AF63E8E5C.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8433 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-109 | DNAJ heat shock N-terminal domain-containing protein |
Publications ? help Back to Top | |||
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