PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_96DCE1858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 224aa MW: 25488.7 Da PI: 8.9881 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.5 | 2.1e-08 | 3 | 33 | 58 | 89 |
FAR1 58 trtgCkaklkvkkekdgkwevtkleleHnHel 89 r C+a+++v +e +++w+v+kle+ HnH+l Traes_5BS_96DCE1858.1 3 MREACNAMMEVVRE-SNHWVVSKLEKTHNHKL 33 6899********99.9**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-6 | 3 | 33 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.4E-29 | 126 | 217 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSMREACNAM MEVVRESNHW VVSKLEKTHN HKLGTCSRVG YLRDRGLLDA SNKITMMGSD 60 GVPFPRQNIL GEGGDAQGLL DYLKKMQAND PAFFHAIQVD KNICLMNVFW ADARAKLAYQ 120 HLGDAVTFDT TYKKNKCMMP FVTFSGVNHH LQRVIFGCAL LMEDTECSFV WLFETWLAAM 180 SGKAPCSLIT DQNRAMKVAI GRVFPHTCHR FCKWHILSRT KHKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193510.1 | 1e-155 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020193511.1 | 1e-155 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020193512.1 | 1e-155 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453JX23 | 1e-156 | A0A453JX23_AEGTS; Uncharacterized protein | ||||
TrEMBL | T1MII9 | 1e-155 | T1MII9_TRIUA; Uncharacterized protein | ||||
STRING | Traes_5BS_96DCE1858.1 | 1e-170 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 6e-59 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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