PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_80C46D9C4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 307aa    MW: 31641.9 Da    PI: 6.1657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_80C46D9C4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-19152197251
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 
                            +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+ ae Aa+a++aa++
  Traes_5BS_80C46D9C4.2 152 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDDAEAAARAYDAAAL 197
                            8********.**********7.....337*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-17151211No hitNo description
SMARTSM003801.1E-34152215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32152211IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22152211IPR016177DNA-binding domain
PfamPF008478.9E-12152197IPR001471AP2/ERF domain
PROSITE profilePS5103224.302152209IPR001471AP2/ERF domain
PRINTSPR003675.9E-11153164IPR001471AP2/ERF domain
PRINTSPR003675.9E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MCCGAEVADP GEHRRRLAAG DDDGGDGREE HALSPPPLNT TMWGRRQAQE MSAMVSALAQ  60
VVAGGVGEGV MASSTKRPAE HEAFAEEAWW STSYGGGDGD GGAPSAASSF LADYTAAPAA  120
SYSPHGAAAG DEELPSPSSA ESGGSGGTPR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG  180
TFDDAEAAAR AYDAAALGFC GSRAKLNFPE SATIPPPQQP PHAPALAMPP PQQPPALLGG  240
QAYSHYARFL RPSTGGSTSG APRTPAPPLI YSFGAGASYP LQPERRGEGA STERPAPVVT  300
SAAAWAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20151209463ATERF1
3gcc_A5e-20151209463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620610.0AK362061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238677.22e-71ethylene-responsive transcription factor ABR1
TrEMBLA0A446U1H51e-149A0A446U1H5_TRITD; Uncharacterized protein
STRINGTraes_5BS_80C46D9C4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-23ethylene response factor 110
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]