PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_580CC3E5F.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 550aa    MW: 62475 Da    PI: 8.1214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_580CC3E5F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.3e-15511321098
                            HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            ++++  + +p kf+++++g+   s  ++le ++g+ ++v+    k  +++vl++GW  Fv+  gLk+g f+vF+++g+s f  +v +f
  Traes_5BS_580CC3E5F.2  51 NFQE-KMAIPQKFVQNFKGQ--ISEVIKLEAPDGNIYDVQA--IKDLNKIVLASGWGVFVSFYGLKAGYFLVFRYIGNSHF--KVLIF 131
                            4444.499******888888..7779***************..999999****************************9999..88777 PP

                            - CS
                     B3  98 r 98 
                            +
  Traes_5BS_580CC3E5F.2 132 D 132
                            5 PP
2B348.91.2e-152112911399
                            TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            ++ + +p kf++++ g    +k ++le ++g+++++++  ++  ++++l++GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  Traes_5BS_580CC3E5F.2 211 RHEMNIPEKFVNNFRGR--IPKVMKLEAPDGNVYNIQV--TNDLNKITLRSGWAAFASAYELKEHDLLVFSYTGNSHF--KVLIFDP 291
                            5679*******888766..7789***************..**********************************9999..9999885 PP
3B335.81.4e-114144961194
                            HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                     B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                            + sg lv+ k++a+++     e++ +tl + ++++ W  +l+++  ++  +l++GW++F+  n+L+e D++vF+++++  e ++vv
  Traes_5BS_580CC3E5F.2 414 SMSGPLVICKDYAAKYLPH--EDQFITLCHpRKSNIWLDNLKVTADGS-GMLSAGWSSFALHNELRESDVCVFEVSKSaGEMTMVV 496
                            445679**********423..34467777747779**99996655544.58***********************887544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.73E-2137136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-2038132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.89841134IPR003340B3 DNA binding domain
CDDcd100171.57E-1942132No hitNo description
SMARTSM010191.5E-844134IPR003340B3 DNA binding domain
PfamPF023623.2E-1345131IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-20195294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-19196294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.646199292IPR003340B3 DNA binding domain
CDDcd100173.52E-17200290No hitNo description
SMARTSM010195.3E-6202292IPR003340B3 DNA binding domain
PfamPF023624.1E-13212290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-16401497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-17403499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.828404500IPR003340B3 DNA binding domain
CDDcd100173.62E-9404498No hitNo description
SMARTSM010190.0043407500IPR003340B3 DNA binding domain
PfamPF023623.4E-9411497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAPDQDHEQG NRSGHSISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ  60
KFVQNFKGQI SEVIKLEAPD GNIYDVQAIK DLNKIVLASG WGVFVSFYGL KAGYFLVFRY  120
IGNSHFKVLI FDFGSCCEKE VFHVLMKCGP NAQEKDTRLD RSLLSGRRYQ NGGSSNGESH  180
RRCEHCDVHF YWHHMDDRQK HFLRLMVGDF RHEMNIPEKF VNNFRGRIPK VMKLEAPDGN  240
VYNIQVTNDL NKITLRSGWA AFASAYELKE HDLLVFSYTG NSHFKVLIFD PSGCEKQLFR  300
IVMNPAPNVQ ENGISHDQLF QKETKRRDGG SRDNNPRKTK KMTPLLDDRR CAAEGVTSPD  360
DTMNAGGPPE TTEPCFVLAM GCNLTTAQKA QIDALVKKVR PVIPFYITAM NKTSMSGPLV  420
ICKDYAAKYL PHEDQFITLC HPRKSNIWLD NLKVTADGSG MLSAGWSSFA LHNELRESDV  480
CVFEVSKSAG EMTMVVHSLE GGHHLRGKEP ESQNKCDYPV KGKAIKEAES DHKHAESKSN  540
YYYSKYAKGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A3B6LHB70.0A0A3B6LHB7_WHEAT; Uncharacterized protein
TrEMBLA0A446TWW00.0A0A446TWW0_TRITD; Uncharacterized protein
STRINGTraes_5BS_580CC3E5F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]