PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_4AD5BD777.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 1070aa    MW: 116491 Da    PI: 6.9099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_4AD5BD777.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.4e-151712541499
                            T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            + +++pk++a+ h   ++es t+tl++  ++++W  ++   kk+ ++ lt+ W +Fv++n++ egD+++F   +  + f ++v+++rk
  Traes_5BS_4AD5BD777.2 171 SYVTIPKEYAAVHF--PHESATITLRSpGKNKKWHPRF--YKKGTMIKLTGSWIHFVRDNDVHEGDICIFVPAKGgKPFMFTVHLLRK 254
                            4589******9997..45788******5566*******..9999***************************77655999999999987 PP
2B351.61.8e-16311406399
                            EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                     B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                            +++t+s+ ++++ + l+k++a+eh   +++++tl+++   g+ W++++ +  rk+++r +l +GW++F ++n L+ gD+++F+l+++ 
  Traes_5BS_4AD5BD777.2 311 SIMTKSNLGSRH-MELSKRYAAEHL--PHRNVTLMFQY-MGKIWNINMLFhdRKYPKRWYLIGGWSKFISDNSLRLGDICLFELKKDe 394
                            567777777777.***********5..34677888776.9********9999******99999**********************998 PP

                            SEE..EEEEE-S CS
                     B3  88 sefelvvkvfrk 99 
                            +e +  v+++rk
  Traes_5BS_4AD5BD777.2 395 KELTVIVHLLRK 406
                            999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-17153254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19155254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.998158255IPR003340B3 DNA binding domain
CDDcd100176.90E-16161253No hitNo description
SMARTSM010191.0E-7161255IPR003340B3 DNA binding domain
PfamPF023628.5E-13171254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19301401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20303411IPR015300DNA-binding pseudobarrel domain
CDDcd100175.85E-19307402No hitNo description
PROSITE profilePS5086312.012308407IPR003340B3 DNA binding domain
SMARTSM010192.1E-14309407IPR003340B3 DNA binding domain
PfamPF023622.4E-13310406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MHQTPPYPGA AEGAVPSSSM DAPLTEERRA ARRVRRRVCS SGLPTSLNHG ESDNAQETST  60
HSTEISSSDC YTQLSSESSD EGCENRSSGH RRKRRKTSVI SSASEQSGQD SPSACESLES  120
DDVQITPGKD YVLPQRCDLS DAEKNRVVAL IKEIKAKVTV FVAIMFRSYS SYVTIPKEYA  180
AVHFPHESAT ITLRSPGKNK KWHPRFYKKG TMIKLTGSWI HFVRDNDVHE GDICIFVPAK  240
GGKPFMFTVH LLRKETTDSQ TEVSHESSEC EDSHGQPPYI LPYGARLSPS QRSAVQKKVD  300
SIQSEVPIYV SIMTKSNLGS RHMELSKRYA AEHLPHRNVT LMFQYMGKIW NINMLFHDRK  360
YPKRWYLIGG WSKFISDNSL RLGDICLFEL KKDEKELTVI VHLLRKESID HPSGGSPVLD  420
SNYVRASTMI ASTVRVGEEP DDEEETASSG REEQGFHDEP IEHNHSEGAS KAHMPTAPCS  480
ESNASGISPS SEAREQAAGC SNKSFATEFP NKLSSTMEHN RIIHTDRAAA SEVIGLSDYR  540
IHNSCDSIDS QGGESLAVQQ QSSPSPEIGN SVNRDSSSVT GQNGVALQSL VRVTGQQVGD  600
AEKEVNASGG ENTLADLRHL EPQNAAAVPS QAALPMPKEK TDTQTNRSAQ PDVAQAQPPQ  660
GEVEQAGLSG VASPQPLQPA QLAQGEAEQD LSGVALPSQP ETRPSISGFV KTRSNLETQS  720
VQQSIAPVQF PQEQAGLSGV ASAQPLVPEM RPSNPLSNIP LERAHPNRGQ SSRQPEVAAG  780
PAQPAQLFPV PSMMFNHPPI GDEPLKNELH RLRLHIDSLD KIYELKQSQL QTECSQEIEK  840
IKQKYDLLLE ERDSVHLEQM KTLDGLLEKV VFHQSLAADF RAKFISSSAA QAKAYSRPIH  900
QTPQASQQAP MRPPGVTSIS PPVAWSSAGR PVVPGGAQPS QVDRPSTPAS SQVPRPPLPS  960
TPVVRPPINP GNLVRTTGAP MPRVPPRGSH GVPSASAPHL QRRLPPRAHS TAPANQRQQQ  1020
QQHATSVSPQ SSHAVPPVSS SPLPPSSSQA THHGSSTRMD VDVVCLSDDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151567.10.0uncharacterized protein LOC109736772
TrEMBLA0A3B6LHT10.0A0A3B6LHT1_WHEAT; Uncharacterized protein
TrEMBLA0A446TYL90.0A0A446TYL9_TRITD; Uncharacterized protein
STRINGTraes_5BS_4AD5BD777.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-09B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]