PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_23717182B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1220aa    MW: 136785 Da    PI: 7.281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_23717182B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004811011124122
                             EEET..TTTEEESSHHHHHHHHHH CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                             ++C    C++sFs++ +L  H r 
  Traes_5BS_23717182B.1 1101 FPCDieGCDMSFSSQQDLLLHKRD 1124
                             789999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005580.0031100IPR003347JmjC domain
PROSITE profilePS5118416.9031100IPR003347JmjC domain
PfamPF023731.5E-172783IPR003347JmjC domain
SuperFamilySSF511973.02E-1128114No hitNo description
SMARTSM003559.411011123IPR015880Zinc finger, C2H2-like
SMARTSM003551511241148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9711241153IPR007087Zinc finger, C2H2
PROSITE patternPS00028011261148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-411261152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.9E-1011531178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40611541183IPR007087Zinc finger, C2H2
SMARTSM003550.001611541178IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011561178IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-1011641207No hitNo description
Gene3DG3DSA:3.30.160.602.4E-1011791207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2411841210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13611841215IPR007087Zinc finger, C2H2
PROSITE patternPS00028011861210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1220 aa     Download sequence    Send to blast
RIRSDNNLTS CEPPWVSPKG HHEDVAFQTL NQKTTVLSPE VLLSAGVPCC RLVQNPGEFV  60
ITFPGAYHCG FSHGFNCGEA TNIATPLWLQ VAKEAAIRRA STNCGPMISH YQLLYELALS  120
LSQREPKDFH TLPRSSRLRD KKKKDEGDTM VKEKFVGSVI ENNNLLSILL DKSSCIIVPE  180
TPFPPTSFPT MMEPELTVKQ SLTGGHCSIS QQAVHNMSVD VALDKSIVVE NMSHSQSVTE  240
ASLSAYNRRK LYETKYGELG TAAFCLSPSK LQSGVTDKDK RGGLLDQGRL PCVQCGVLSF  300
ACVAIIQPRE AAVQFVLSRE GISSSAKPGE VSESDGISNW ITKNIEMVPQ QGQASEALSV  360
SLAHVSDRCG QLYSRNNNGS TSALGLLAST YGSSDSEEES NQGKDNQLLE TSVSFSSTVQ  420
RQRSNSHLYE ECCEAKTTTS LLKSIEDNST TITRCGRDTD INHLAKLREQ GTTYDQCSVY  480
IDLANDLTIS GVKAYSDTHV TTAKSSIEPD VLTQLKYNND SCRMHVFCLE HALGTWTQLQ  540
KIGGANVMLL CHPEYPRAES AAKFIAEELG LKPDWKDVAF EEATDDDIRR IQLALHDEDA  600
EPASSDWAVK MGINIYYSAK QSKSPLYSKQ IPYNSIIYEA FGQENPDNLT DYGRQRSGVT  660
KKRVAGCWCG KVWMSNQVHP FLVREHEEHN HAIVCSKVML GANYHEIVYD EPSLTCNTMV  720
NCSPSKRISR RKGRDSIEKS GARKKRCSAN DEATLHCSSL GMNSKTISDQ PRNFDDHDKH  780
EGGKITEAPS TQQYQQYTLQ SMNMKSSSNK PKDYKGNRNF LDLYDEANDV DCWFNIDSGD  840
STAIRHLEDS RQQEFGTVKA KSPGKLQGNM RKSSKCKASD DSLNGDKKVQ KMNKKSISRK  900
QKDVEINTQF REEYDEDNNW EEVPEGKDHD VKVESRAKTR SGEDDKRNNN SHELNDEYND  960
MDCWHDIHRG DNATMGNLDN SPVQRLEAAE VKSGGKLHCC KRKSSKGKAK DNYSNGDEKL  1020
QMLNIESISR KQKSDSQFDE GCGRDNALDS LLNDVDEATR ENCYEVREEE MDGMEVKPRG  1080
KVQTGKRKTS RCQAGDKAAK FPCDIEGCDM SFSSQQDLLL HKRDICPVKG CKKKFFCHKY  1140
LLQHRKVHMD ERPLNCEWKG CKKTFKWPWA RTEHMRVHTG VRPYECMVPG CGQTFRFVSD  1200
FSRHKRKTGH SSGKKNKEST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A6e-571098121820140Lysine-specific demethylase REF6
6a58_A6e-571098121820140Lysine-specific demethylase REF6
6a59_A6e-571098121820140Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144RDKKKKD
2729745RRKGRDSIEKSGARKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201011.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A3B6LIB40.0A0A3B6LIB4_WHEAT; Uncharacterized protein
TrEMBLA0A446TZW60.0A0A446TZW6_TRITD; Uncharacterized protein
STRINGTraes_5BS_23717182B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-124relative of early flowering 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]