PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_D85C0EF26.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 31009.1 Da PI: 5.2027 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv G +W+++++ g+ R++k+c++rw +yl Traes_5BL_D85C0EF26.1 14 KGPWTAEEDQKLVSFLLSNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 6.6e-18 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + eE++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ Traes_5BL_D85C0EF26.1 70 LSDEEEKTVIDLHEQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 589****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.172 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.069 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.67E-13 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL SNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDEEEKTVID LHEQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPATHKPLQ PAAVATYQHP QRPTGGESPE QKVPAAAATG SQSGAEEDMF CPDEVPTMMQ 180 LLDNIILPCD VVEPAPLDSS CGTASSPAES SSSSSSASAA SSGGGGFEDD WLPKIMEWPV 240 EPMFMMGLDV DVVTGPTSAW EFEDAFNAYQ RIALFDHQET WA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375263 | 0.0 | AK375263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186333.1 | 0.0 | protein ODORANT1-like | ||||
TrEMBL | A0A3B6LLX0 | 0.0 | A0A3B6LLX0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_D85C0EF26.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 2e-88 | myb domain protein 20 |
Publications ? help Back to Top | |||
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