PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_C94A0F1D4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 27428.6 Da PI: 9.939 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.8e-18 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++++eIrdp + +r +lg+f+taeeAa+a++aa+ ++ g Traes_5BL_C94A0F1D4.1 12 RYRGVRQRR-WGKFASEIRDPI----QgRRLWLGTFDTAEEAAAAYDAAKIRISG 61 69****998.**********82....36*********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.101 | 12 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 12 | 63 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.19E-16 | 12 | 44 | No hit | No description |
Pfam | PF00847 | 9.2E-12 | 12 | 61 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-28 | 12 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-25 | 12 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
PPSAGARTPS VRYRGVRQRR WGKFASEIRD PIQGRRLWLG TFDTAEEAAA AYDAAKIRIS 60 GSRRPADGFP FSFPPPEPAK PTVLRLPMPQ PAKPTILRLP MPQPAKRITS PPPPPPPPEP 120 AKPAISPPPL PAKPFALPLK LRLKLSFNAQ VKDKGWNWCS AGDVKEEEDG GCDGEAKVGD 180 VSIAGEVKVE AGGCAGEVKV EGVGCCADES KEAGGSSEVQ AVKPMWAMIT GKRKKRSGCG 240 TRVGALHASS VCVEEVGGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 13 | 63 | 6 | 57 | ATERF1 |
3gcc_A | 1e-16 | 13 | 63 | 6 | 57 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356841 | 1e-140 | AK356841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040O03. | |||
GenBank | AK363180 | 1e-140 | AK363180.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013E23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174667.1 | 1e-126 | actin cytoskeleton-regulatory complex protein pan-1-like | ||||
TrEMBL | A0A3B6LW66 | 0.0 | A0A3B6LW66_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_C94A0F1D4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 7e-14 | ERF domain protein 10 |
Publications ? help Back to Top | |||
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