PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_BCAA67AC6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 275aa    MW: 30430.6 Da    PI: 8.221
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_BCAA67AC6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.54.2e-2260115156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  Traes_5BL_BCAA67AC6.1  60 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 115
                            688999***********************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-2342117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-2446117IPR009057Homeodomain-like
PROSITE profilePS5007118.30157117IPR001356Homeobox domain
SMARTSM003891.5E-1958121IPR001356Homeobox domain
CDDcd000862.80E-1760117No hitNo description
PfamPF000461.3E-1960115IPR001356Homeobox domain
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEGGGQLGGA FMGSTGSGGD GDSLGRARED ENDSRSGSDN LDGASADELD PDNSNPRKKK  60
KRYHRHTPQQ IQELEAVFKE CPHPDEKQRM ELSRRLNLES RQVKFWFQNR RTQMKTQIER  120
HENALLRQEN DKLRTENMTI REAMRSPTCG NCGGAAVLGE VSLEEQHLRI ENSRLKDELD  180
RVCALAGKFL GRPVSAISSP LSLPSSLXXX XXXXXXXXXX WECSPSPTSW AAARRPCACP  240
LASWAAASTT ASAATAAPST AARCWSSGSR QWRSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657940.0AK365794.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163116.11e-143homeobox-leucine zipper protein ROC6-like isoform X2
SwissprotQ7Y0V71e-106ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA0A453LDK01e-145A0A453LDK0_AEGTS; Uncharacterized protein
STRINGTraes_5BL_BCAA67AC6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5111922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.22e-88HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]