PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5BL_BC56C7E17.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 826aa MW: 93188.5 Da PI: 6.3223 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.1 | 5.8e-18 | 76 | 160 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA ++GF v+++ks+ + + g + + +vC+++g+ +e+ + r++ +t+C+a+++ +++ dg ++t+++leHnH+ Traes_5BL_BC56C7E17.2 76 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLLLVCNRWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGMLHLTDVSLEHNHP 157 6*****************9998.6777****************9999.....999********************************* PP FAR1 89 lap 91 l+p Traes_5BL_BC56C7E17.2 158 LNP 160 975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-16 | 76 | 160 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.9E-25 | 265 | 357 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.371 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0041 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.4E-5 | 557 | 576 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 826 aa Download sequence Send to blast |
MADLIPGEGE LAFGGNQDDD DAEDASPGSK ELAAMVEAAA AASVELDAAA DRAPPYGDDR 60 TPRDGMVFKS YEEVLNFYKR YALRTGFGVC VKKSSFTKAG LCRRLLLVCN RWGNGKEDAC 120 YQARPTAKTN CQATVVARLW GDGMLHLTDV SLEHNHPLNP SAARFLRCYK TLPSGMSKDL 180 VVRAARGECA TSGGDVEAPP MFDDWGRLKI RDGDVQAINC FFAEMQAKQP NFFYVMDFYV 240 EGHLRSVLWA DSRSREAYQY FSDAIWVDTT CLRSKFNVPL VLFLGVNHHG QLVLLGCGLL 300 SDESTESLLW LFKAWLTCMK GRLPGAMITD ESVAIKAAVR EVFPKTRHRI SDWHIVRSIA 360 EKLGELPEYE SIKVQMEAVI YGSLKDDQFE TRWKNLINRF SLQDNEWVIF LYENRHLWVP 420 SFLKDAFWAG LSVNHRESPG AFFDGSVSHE TTLVSFLSNY MILVQYKYKM EQQDDFESLT 480 SGRVLVSKFP MEEQISKLYT MNMFVKFQDE LKSTLDCQVQ QVSPSSFVVI DLAEQGTGLV 540 TRKYEVVHCM ETNRMECNCG LFQFSGIVCR HALSVLKWQQ VYDIPPCYVL NRWRSDFKQL 600 HALDNPLKDP LVASNHVERY DHISLQCLRL VEIGMVSDDK YQHALKLISD MKRTLLDDNL 660 CRELEQKMSP PERAVVVNGD SHAQPGSSEG GPAKKRRGRP PKRSKEISVE SVSNQCGNKQ 720 ESLLVSSDVS QKGALHSSST ASNLGTHVRA HGVDDLMEEV NANEVSFESR YGVQSSHPNH 780 YGDQLHPGHT LQFGQHMPSA EQSRGVEWVY PTIYQDDQVP YGRRTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178274.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A453MGV2 | 0.0 | A0A453MGV2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BL_BC56C7E17.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-116 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|