PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B2792D532.2
Common NameWRS1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 254aa    MW: 28806.7 Da    PI: 5.928
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B2792D532.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37e-101732072155
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                            k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Traes_5BL_B2792D532.2 173 KWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 207
                            569*****************************885 PP
2ELK43.94.9e-15127148122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELKhqLlrKY+gy gsL+qEF+
  Traes_5BL_B2792D532.2 127 ELKHQLLRKYGGYVGSLRQEFC 148
                            9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037902.4E-17136IPR005540KNOX1
SMARTSM012551.5E-12138IPR005540KNOX1
SMARTSM012564.8E-284495IPR005541KNOX2
PfamPF037912.4E-244894IPR005541KNOX2
PROSITE profilePS5121311.453127147IPR005539ELK domain
PfamPF037896.3E-11127148IPR005539ELK domain
SMARTSM011889.7E-8127148IPR005539ELK domain
PROSITE profilePS5007112.795147210IPR001356Homeobox domain
SuperFamilySSF466891.63E-19149219IPR009057Homeodomain-like
SMARTSM003893.0E-13149214IPR001356Homeobox domain
CDDcd000862.10E-15150210No hitNo description
Gene3DG3DSA:1.10.10.605.6E-28152213IPR009057Homeodomain-like
PfamPF059201.3E-16167206IPR008422Homeobox KN domain
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAHPLYSPLL ASYLDCQKVG APPEVLERLS AVAAKLDAGH GRGKHESPRP DPELDQFMEA  60
YCNMLAKYRE ELARPIQEAT EFFKSVETQL DSITFTDSTN CEGAGSSEDE LDTSCVEEID  120
PSAEDKELKH QLLRKYGGYV GSLRQEFCKR RKKGKLPKEA RQKLLHWWEL HSKWPYPSET  180
EKIALAESTG LDQKQINNWF INQRKRHWKP APEDMPFSVM DGGVGVSFLP APQGPALYMD  240
RAPFMVDGMY RLGS
Functional Description ? help Back to Top
Source Description
UniProtPlays a possible role in patterning the placement of lateral organs along the axis of the shoot. Mutations in RS1 alters cell fate and causes unregulated cell division and expansion in the leaf. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434550.0AB443455.1 Triticum aestivum WRS1 mRNA for homeobox protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156617.10.0homeobox protein rough sheath 1-like
SwissprotQ418531e-111RSH1_MAIZE; Homeobox protein rough sheath 1
TrEMBLA0A3B6LSJ70.0A0A3B6LSJ7_WHEAT; Uncharacterized protein
STRINGTraes_5BL_B2792D532.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-94KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Schneeberger RG,Becraft PW,Hake S,Freeling M
    Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.
    Genes Dev., 1995. 9(18): p. 2292-304
    [PMID:7557382]
  2. Kerstetter R, et al.
    Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes.
    Plant Cell, 1994. 6(12): p. 1877-87
    [PMID:7866030]