PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_A4B8421A7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 330aa MW: 36279.1 Da PI: 9.6409

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_A4B8421A7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.4	1.2e-11	151	179	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le+ Traes_5BL_A4B8421A7.1 151 KTLRRLAQNREAARKSRLRKKAYIQQLET 179 7789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-4	147	205	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-8	148	192	No hit	No description
PROSITE profile	PS50217	8.749	149	192	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-8	151	179	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.75E-7	151	184	No hit	No description
PROSITE pattern	PS00036	0	154	169	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.2E-26	237	307	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MIASSSMSKE STSYDMADFD QTAIFLYLDG HDPQSIQEQR QTLNIFPSQP MHAAEPLNPA 60 AKINGGAVMA AMLANGGNPQ QASPKRPEQQ QLVLQGAAGG PNATPLLTGS AKDNKNSASL 120 IKKEGTSSGK GATSSSTDPD REGSRRTQDP KTLRRLAQNR EAARKSRLRK KAYIQQLETS 180 RIRLSQIEQQ VQAGRVQGVL LGTGEHHQGL PSAPSFAGMF DVEYGRWVEE HSKLIFQLRA 240 LLNDNAPDNQ VQVLVGGAMA HHEELLNLKA AIARIDIFHL LCGVWASPAE RCFLWLGGFR 300 PTEVIKVCTQ QFDCFARKDL PIQYQRRPRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252400	0.0	AK252400.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf157i09, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190892.1	0.0	transcription factor TGAL7-like
Swissprot	Q6H434	1e-140	TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBL	A0A446U6R2	0.0	A0A446U6R2_TRITD; Uncharacterized protein
STRING	Traes_5BL_A4B8421A7.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2732	36	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	5e-70	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]