PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_9C687EE11.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18047.5 Da PI: 10.0058 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H +H Traes_5BL_9C687EE11.5 55 FVCKTCGRAFATFQALGGHRTSH 77 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00043 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H Traes_5BL_9C687EE11.5 105 HECHICGLGFEMGQALGGHMRRH 127 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 49 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.5E-9 | 55 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.23E-8 | 55 | 127 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-10 | 105 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.49 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.39 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKRAREEEPK PTMSLALSLG TDSAPSAGTS SDSGAGAPAK RRRGAVVVTS GEGEFVCKTC 60 GRAFATFQAL GGHRTSHLRG RHGLELGVGV ARAIKERKKR EEKQHECHIC GLGFEMGQAL 120 GGHMRRHREQ MAPRGADDRW VALLPDQEVA GHHAAADQPP PVLLQLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU408224 | 2e-89 | EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198432.1 | 1e-103 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A446UTS8 | 1e-116 | A0A446UTS8_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_9C687EE11.5 | 1e-118 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 1e-19 | C2H2 family protein |
Publications ? help Back to Top | |||
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