PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9BEB44AEE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 457aa    MW: 51459.2 Da    PI: 8.4798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9BEB44AEE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-10431053398
                            -SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  33 sktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            ++t  + ++ g ++W vk+  ++  ++ +l++GW +Fv a+g+ +g  +v++++   ++ l++k+f+
  Traes_5BL_9BEB44AEE.2  43 GRTALVLSPFGkNVWPVKV--DRDAKGAFLGDGWPQFVAAHGIGVGWYLVIRHE--GCGVLTLKAFN 105
                            44555566555499*****..*******************************65..57778888776 PP
2B346.37.6e-153904463286
                            --SEEEEEE.TTS-EEEEEE.....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  32 esktltled.esgrsWevkliy...rkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                            +  ++tl++ e+++sWev+        +  r    lt+GWk F+k+n+Lk+gD+++Fk+++
  Traes_5BL_9BEB44AEE.2 390 C--KITLKSvERNKSWEVEGVNyhpGTN--RsyNCLTRGWKAFCKENELKAGDVCTFKVIK 446
                            3..7999998999******944455333..34489***********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.7E-416107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1020107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-1023106IPR015300DNA-binding pseudobarrel domain
CDDcd100177.02E-738113No hitNo description
PfamPF023624.9E-844106IPR003340B3 DNA binding domain
PROSITE profilePS508638.72757107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-4131225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-6132225IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.893176228IPR003340B3 DNA binding domain
SMARTSM010190.001365457IPR003340B3 DNA binding domain
CDDcd100174.89E-13378443No hitNo description
SuperFamilySSF1019361.55E-13379456IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-14382456IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-12389455IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603391457IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGLSSNCAKT IKVQQCVKLS DSNYLHINDE LAGCFGTEDH GDGRTALVLS PFGKNVWPVK  60
VDRDAKGAFL GDGWPQFVAA HGIGVGWYLV IRHEGCGVLT LKAFNSSFVI KEFGLTITVL  120
SPAEIENAFA RKPQFIVPLQ RSFMEKMPIP PEFLQRGYIS EEDLNRPRPI ATFLTSWHIE  180
LKKDGPNVFF TGSEWPKFLA YFEIAETDVL LIKYQGCMNF SFETFPNGNN EHTEEKISSS  240
QQSEQSPAAQ CQEEEHVSTR RRTQSSGITP GAQSQEEEHV STRTRKQSNG KTPGAQSQEE  300
EPVSTQKRKQ SNGKTPGAQS QEEEHVCSRK RKQSEVKSML DGPTTSQHRK KALCELGSTG  360
SQAWLRKEIN GLALKRYLHF PARFGFLERC KITLKSVERN KSWEVEGVNY HPGTNRSYNC  420
LTRGWKAFCK ENELKAGDVC TFKVIKSTLW HVVIDRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327332SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181877.10.0putative B3 domain-containing protein Os04g0346900 isoform X1
RefseqXP_020181878.10.0putative B3 domain-containing protein Os04g0346900 isoform X1
TrEMBLA0A3B6LVB90.0A0A3B6LVB9_WHEAT; Uncharacterized protein
STRINGTraes_5BL_9BEB44AEE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-07B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]