PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_8D6C8E27F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 220aa    MW: 24631.5 Da    PI: 4.8501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_8D6C8E27F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1648102156
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            + y+GVr++ + g+Wv+e+r+p+++g + r +lg+f tae+Aa+a++ a+++l g+
  Traes_5BL_8D6C8E27F.1  48 PVYRGVRRRGRVGQWVCELRVPVSRG-YYRLWLGTFATAEMAARAHDSAALALSGH 102
                            68*******************99988.9************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-1248102IPR001471AP2/ERF domain
SMARTSM003802.8E-1749115IPR001471AP2/ERF domain
PROSITE profilePS5103220.74549109IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1649111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-2649111IPR001471AP2/ERF domain
PRINTSPR003678.9E-55061IPR001471AP2/ERF domain
CDDcd000181.54E-1562111No hitNo description
PRINTSPR003678.9E-57591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDTVAAWPQF EGQEYMTVWP EEQEYRTVWS EPPKRRAGRI KLQETRHPVY RGVRRRGRVG  60
QWVCELRVPV SRGYYRLWLG TFATAEMAAR AHDSAALALS GHDACLNFAD SAWRMMPVHA  120
TGSFRFAPAQ EIKDAVAVAL EAFQEQHPAD ASTTEASAPS ITSSDLSGLD DELRMDGMDA  180
GAYYASLAQG MLMEPPAAGA WREDREHDDG FDTPTVLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7584900.0JF758490.1 Triticum aestivum clone 260E13 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167752.11e-146dehydration-responsive element-binding protein 1B-like
SwissprotQ3T5N49e-52DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B
TrEMBLA0A3B6LQK41e-160A0A3B6LQK4_WHEAT; Uncharacterized protein
STRINGTraes_5BL_8D6C8E27F.11e-161(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-24C-repeat-binding factor 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]