PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_883AD53FB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 134aa MW: 13165.1 Da PI: 7.9569 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31.8 | 3.1e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vk+Ltl+hvkSHLQ+YR+ Traes_5BL_883AD53FB.1 1 MNVKDLTLAHVKSHLQMYRT 20 9******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-8 | 1 | 20 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MNVKDLTLAH VKSHLQMYRT VKGTDRSSQI ATGEQQMMVV DAGGGRGCGG GGGGGVVATL 60 PACDVDMAGF CGAPAAAAAS APPAATTSSA AHFLCASATG AAAAAAAPLV ALVPSPPPPP 120 IPPRYVWMST NITY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 51 | GGRGCGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374118 | 1e-160 | AK374118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054O18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193685.1 | 2e-29 | uncharacterized protein LOC109779471 | ||||
TrEMBL | A0A3B6LTR6 | 1e-77 | A0A3B6LTR6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UNI2 | 1e-77 | A0A446UNI2_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_883AD53FB.1 | 7e-91 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6554 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 5e-11 | G2-like family protein |
Publications ? help Back to Top | |||
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