PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_80B490E25.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 483aa    MW: 54066.2 Da    PI: 6.7298
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_80B490E25.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-11641253298
                            --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            +s  ++le ++g+ ++v++    k g ++lt+GW++Fv+an++++gD ++F + g+s+f  +v+++ 
  Traes_5BL_80B490E25.1  64 GSEPIKLEAPDGQMYSVEF---VKFGLITLTTGWRRFVDANHIQQGDPILFVYCGSSTF--KVHICT 125
                            5557999************...5566799*************************99999..888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.99733127IPR003340B3 DNA binding domain
SMARTSM010197.1E-634127IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-1439126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1142127IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-961125IPR003340B3 DNA binding domain
CDDcd100174.25E-1065124No hitNo description
Gene3DG3DSA:2.40.330.105.7E-10194305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-9199304IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2204300IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-12368480IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-13374481IPR015300DNA-binding pseudobarrel domain
CDDcd100176.70E-10377477No hitNo description
PROSITE profilePS508638.741379479IPR003340B3 DNA binding domain
SMARTSM010193.8E-4379479IPR003340B3 DNA binding domain
PfamPF023621.5E-7379478IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDTDEFFNPG CGGPAGDGCD CGDCEEWRHD HGRTKHFLLF ASDHKDFLCT PWEVTRQLRN  60
MITGSEPIKL EAPDGQMYSV EFVKFGLITL TTGWRRFVDA NHIQQGDPIL FVYCGSSTFK  120
VHICTSSGHK NSLPCSQQPP NILRAVLLRD RHVLNEQVVP DPAHVQTSTD FGYTMFPGTC  180
LSKAQEKKVL ELADSSMRSE IPLHVAPMNK RNASKDYYVC IPLRLLDNFK EGITETVIQL  240
EAHGNNMVYS VGVSKHSDDQ IILQSELSDF VASLRIQDND LLVFRSKRKA RLEVLVLDPS  300
GCEKTCFAMG NSSNAQEMAL TSSPCIKSGC PAGKLNEAGL EAPMSNKSYI LPERKNLTWQ  360
QEKKVKEKVH AIESEFPVFV KVMTARDLSN PTKLLFCKEY ASACLPLKQT PLLIGLEGST  420
MQWPTTLTVT EYTKGRMISL LWKDFVLDVG MKAGDICLVE LADRSSDSLK MMVHLIRKSE  480
MQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163991.11e-158B3 domain-containing protein Os03g0620400-like
TrEMBLA0A3B6LVV00.0A0A3B6LVV0_WHEAT; Uncharacterized protein
STRINGTraes_5BL_80B490E25.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4189123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.13e-07B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]