PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G57720.1 | ||||||||
Common Name | MRI1.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 300aa MW: 34398.6 Da PI: 4.6552 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.9 | 1e-19 | 13 | 104 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k++ +++ s++lv+p+++ + + ++ ++t +l++++gr W+v+ +k+++ + l++GW +Fvk+ngL ++Df++F++dg+++f +v+++ AT5G57720.1 13 FLKIF--NSHEDSQLLVIPRSYNRYYPNP--LPQTAVLKNPEGRFWNVQW--TKSQEViISLQEGWVKFVKDNGLIDRDFLLFTYDGSRSF--WVRIH 102 66777..66667778*******9777655..889****************..888888999************************998888..**999 PP -S CS B3 98 rk 99 r+ AT5G57720.1 103 RN 104 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-20 | 9 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-19 | 10 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.88E-17 | 11 | 103 | No hit | No description |
PROSITE profile | PS50863 | 13.535 | 11 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-18 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-18 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-7 | 204 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-8 | 204 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.011 | 209 | 299 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MVLENGFPPY PDFLKIFNSH EDSQLLVIPR SYNRYYPNPL PQTAVLKNPE GRFWNVQWTK 60 SQEVIISLQE GWVKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRNGLPLEP TAPIKIQEIS 120 DDEDETNGDG DPHMEEEGDT DENMIVSLSL GSSDEVGDDD DDDYDTAICD EVNKASGSSK 180 KGRVTRKHRD DSLASITPQI FLADPNNPFF ISTSSCSRRI LVIARQVIKD YGLNFDGTVN 240 LIDGFGELTR KVGKWKDRVV IYKWNEMFTR NKVKQGDVII CEIIREEDVV RSIKVHFVKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-14 | 13 | 106 | 11 | 103 | At1g16640 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145359368 | 0.0 | ||||
Genevisible | 247875_at | 0.0 | ||||
Expression Atlas | AT5G57720 | - | ||||
AtGenExpress | AT5G57720 | - | ||||
ATTED-II | AT5G57720 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G57720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G57720 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493797 | 0.0 | AB493797.1 Arabidopsis thaliana At5g57720 mRNA for hypothetical protein, partial cds, clone: RAAt5g57720. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200580.1 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9FHH1 | 0.0 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | A0A178UQC3 | 0.0 | A0A178UQC3_ARATH; Uncharacterized protein | ||||
STRING | AT5G57720.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT5G57720.1 |
Entrez Gene | 835879 |
iHOP | AT5G57720 |
wikigenes | AT5G57720 |
Publications ? help Back to Top | |||
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