PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_7F0FD1538.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 1409aa    MW: 156242 Da    PI: 7.8255
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_7F0FD1538.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-1612881337255
                    AP2    2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55  
                              y+GVr++  +g+WvAeI++p   + r +r +lg+f ta eAa+a++ a+++++g
  Traes_5BL_7F0FD1538.2 1288 AYRGVRQRT-WGKWVAEIHEP---N-RgQRLWLGSFPTAVEAARAYDDAARAMYG 1337
                             59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147981.81E-8250343No hitNo description
SuperFamilySSF525401.17E-52414682IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.7E-14427596IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.7E-54428708IPR002182NB-ARC
PRINTSPR003643.2E-14447462No hitNo description
PRINTSPR003643.2E-14519533No hitNo description
PRINTSPR003643.2E-14616630No hitNo description
SuperFamilySSF520587.14E-207471067IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.9E-127571064IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003643.2E-14970986No hitNo description
SuperFamilySSF541712.81E-1912881345IPR016177DNA-binding domain
PfamPF008471.1E-1012881337IPR001471AP2/ERF domain
SMARTSM003805.2E-3412881351IPR001471AP2/ERF domain
PROSITE profilePS5103221.21912881345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2812891346IPR001471AP2/ERF domain
CDDcd000182.28E-1712891347No hitNo description
PRINTSPR003672.5E-812891300IPR001471AP2/ERF domain
PRINTSPR003672.5E-813111327IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1409 aa     Download sequence    Send to blast
MDALSSAGNL KGPRLKVRQE SHAIKKPPGA QVHGRPEQQQ GRAVRVHANV KNFREIVQYL  60
TGGILASDSV VQQLICTLEC QIVETVERQS ILPPELPPPP SAPMSPAARL ESIASSVRPV  120
PVDLTDDRSE DGGLAVAGVA DDDRLSLKCA LPSSLLPESA SGQFSPQGPK SDDDWLSLHC  180
PLPSSPPVAA SRQFSPEGPN LAEQLEQLVS DISREDHSQI KQMRQTKKRV QKLQAPVCAM  240
ADAMFRLPAK LDGLLARHGH TLPRGAEEEI PLIKQDLDKM VALLQEHDDS GAAEDRAMTG  300
KCLAKEVREL SYDMEDTVDQ YEHAAAATKR GMLSPRRKKY KITCRRSKGT TGLRDKLKWR  360
LWMANKIREF SVRSQEALQR YSLFNHSGDN GISAAAIGGT GCSTSPRSDA SFGSWRPTRY  420
GKPIGIDAPM KKLETWLGKD GEQRLKVASV VGSVGIGKTT LAKELYRRIG GLFECRAFVH  480
TSRKPDVRRL LISMLSQIQP YHTPHNWKVH SLIADIRTHL QDKRYLIVID DVWTTQTWDI  540
INRALPAGNL CSAILITTEV DDVALKCCGY DSKNVLTMKQ LGHDDSSKLF FSTVFGPQYE  600
CPPELSEVGD SIIRKCAGLP LAMVTVASLL VNHMGKPERW HYVNKSLGYG LRTNPTSEGM  660
KQVLDLSYNN LPQHLKPCVM YLSIYEEDYI IQKDDLVKQW IAESFIHATE EKDKEGISRS  720
YFDQLISSRV ILPVHINDND DVLSCMVHHI VLDFLTQKSL EENFITTIDH SQTTARLADK  780
VRRLSLHFGN AEATPPINMR LSQVRTFAFF GVFKCLPSIV EFRLLQVLIL HLWGNDESIS  840
VDLAGISELF RLKYLHFTCN ATLEVPQNQM RGLRYLETLK IDARVSAVLS DIVHLPGLLH  900
LSLPVESNLP SGIGSMTSLC TLGYFNLCVN SIDNVQSLGK LTNLRDLRLT CSTVPTYLKS  960
KMDNMGSILS NLSNLRSVTL KPSGSLESGP SSMSISCDGL TSVSSPPVFL ERFEWFPHIC  1020
TFSSIPRWIG HLNKLCILKI GVRELASDDV DVLRGLPALT VLSLYVRAKP AERIVFTKTG  1080
FSVLNCFKFR CSVPWLEFEV DAMPNLLKLK LIFDAHGVDQ HGTIPVGIMH ITGLKEISAK  1140
IGCAGASDPD RRAAESALID AIKMHPARLS FNIQCLDEMF NGKDDNNSRV QEEEIEHTTL  1200
QKQYVVMEED SIEQHGLLQK GSREDAHCRK KKVRGRSTGP GSVAEIIKKW KEQNQKLQQD  1260
NRSLKAPAKG SEKGCMAGKA GPENSNCAYR GVRQRTWGKW VAEIHEPNRG QRLWLGSFPT  1320
AVEAARAYDD AARAMYGATA RVNFSEHSPD ANSGCTSAPS LQMSNEATTA SHPSDEKDES  1380
ESPHLISNAP TAVLHQSDAK DESDTILRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-39424980161718Disease resistance RPP13-like protein 4
6j5t_F1e-39424980161718Disease resistance RPP13-like protein 4
6j5t_G1e-39424980161718Disease resistance RPP13-like protein 4
6j5t_L1e-39424980161718Disease resistance RPP13-like protein 4
6j5t_O1e-39424980161718Disease resistance RPP13-like protein 4
6j5u_A1e-39424980161718Disease resistance RPP13-like protein 4
6j5v_A1e-39424980161718Disease resistance RPP13-like protein 4
6j5w_A1e-39424980161718Disease resistance RPP13-like protein 4
6j6i_C1e-39424980161718Disease resistance RPP13-like protein 4
6j6i_F1e-39424980161718Disease resistance RPP13-like protein 4
6j6i_G1e-39424980161718Disease resistance RPP13-like protein 4
6j6i_L1e-39424980161718Disease resistance RPP13-like protein 4
6j6i_O1e-39424980161718Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7552520.0JQ755252.1 Leymus triticoides DRE-binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161815.10.0putative disease resistance RPP13-like protein 2 isoform X2
TrEMBLA0A3B6LRX80.0A0A3B6LRX8_WHEAT; Uncharacterized protein
TrEMBLA0A446UIK40.0A0A446UIK4_TRITD; Uncharacterized protein
STRINGTraes_5BL_7F0FD1538.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.14e-29ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]