PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_6647931E2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 25573.3 Da PI: 4.6153 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.9e-16 | 41 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + rWv+e+r+p ++g +r +lg++ tae Aa+a +aa+++l g Traes_5BL_6647931E2.1 41 PVYRGVRRRGNAERWVCEVRVPGKRG--ARLWLGTYATAEIAARANDAAMLALGG 93 68*******************95544..***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 41 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-16 | 42 | 104 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.8E-16 | 42 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-25 | 42 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.639 | 42 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.87E-18 | 43 | 104 | No hit | No description |
PRINTS | PR00367 | 5.1E-5 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-5 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGMGLEIPSS SLSSSNENAP GRASAAKRPA GRTKFRETRH PVYRGVRRRG NAERWVCEVR 60 VPGKRGARLW LGTYATAEIA ARANDAAMLA LGGRSAARLN FPDSAWLLAV PSAHSDLADV 120 RRAAVEAVAD LQRREAAGGS ITATAAEEAS CGAPAESSSE SDDAGSSETS KPSADGDFAV 180 PGGMDIEMFS RLDLFPEMDL GSYYASLAEA LLMDPPPVAT GTGAYWDNGE CGEAEGATEF 240 ALWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU194243 | 0.0 | EU194243.1 Secale cereale CBFIIIc-10 (CBFIIIc-10) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179851.1 | 1e-152 | dehydration-responsive element-binding protein 1H-like | ||||
Swissprot | A2Z388 | 3e-58 | DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H | ||||
Swissprot | Q0J090 | 3e-58 | DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H | ||||
TrEMBL | A0A3B6LQN3 | 1e-171 | A0A3B6LQN3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_6647931E2.1 | 1e-173 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 4e-28 | dehydration response element B1A |
Publications ? help Back to Top | |||
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