PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5BL_657BF1497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 40022.1 Da PI: 9.4221 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.4 | 3.8e-55 | 29 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+++yL+ k+++ ++++ ++i+evd++k+ePwdLp +k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tg Traes_5BL_657BF1497.1 29 LPPGFRFHPTDEELITYYLRGKIADGSFTA-RAITEVDLNKCEPWDLPaEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTG 115 79*************************999.89***************7788999********************************* PP NAM 88 kdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 kdke+++ +elvg+kktLvfykgrap+gek++Wvmheyrl Traes_5BL_657BF1497.1 116 KDKEIFTGqppsAQELVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 160 ******9888877888***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-62 | 25 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.053 | 29 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-28 | 30 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MEGSGAGGGG GGAAVSKKKS SKEGEEESLP PGFRFHPTDE ELITYYLRGK IADGSFTARA 60 ITEVDLNKCE PWDLPAEKAK MGEKEWYFFS LRDRKYPTGV RTNRATNAGY WKTTGKDKEI 120 FTGQPPSAQE LVGMKKTLVF YKGRAPRGEK SNWVMHEYRL HLKPASKSNK DEWVVCRIFA 180 KSPGVKKYPS STNAHSRSHH HPYTLDMVPQ FLPTLLGHDL FGGGRGHHHP YMTPADLAEL 240 SRFARGTPGL HPHIQPHPAG AGYLNPPGPF TLSSLNLNLG GPSPAMPSPH HVLHHAMSMP 300 MGQQQQQAGG ANGQAMTMEQ HMAAGLGGIP AAGGDGGFGG EGHAAGGAGM RYQNLDVDQM 360 VERYWPGSY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 28 | 187 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 28 | 187 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 28 | 187 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 28 | 187 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 28 | 187 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 28 | 187 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186546.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLJ2 | 2e-79 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A3B6LPK9 | 0.0 | A0A3B6LPK9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_657BF1497.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9361 | 38 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24430.2 | 2e-84 | NAC domain containing protein 38 |
Publications ? help Back to Top | |||
---|---|---|---|
|