PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_5299B6B33.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 209aa    MW: 22051.5 Da    PI: 5.6629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_5299B6B33.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-163890155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr++ + grWv+e+r+p ++    r +lg++ ta+ Aa+a++aa++ l g
  Traes_5BL_5299B6B33.1 38 PVYRGVRRRGNAGRWVCEVRVPGQR--GERLWLGTYLTADAAARAHDAAMLGLLG 90
                           68*******************9444..4*********************997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-113886IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2639101IPR001471AP2/ERF domain
PROSITE profilePS5103221.5223999IPR001471AP2/ERF domain
SMARTSM003807.4E-1839105IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1639101IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDMTGSDQQW SSPSSPSSAS SHPKRPAGRT KFKETRHPVY RGVRRRGNAG RWVCEVRVPG  60
QRGERLWLGT YLTADAAARA HDAAMLGLLG RSAACLNFPD SAWLLAVPPA LTDLAAFRRA  120
ALAAVADFQR RHASNGAATV PADEETSGAS ALSSADNAGG SSATSQPWAE GTFEVPSALG  180
SDMFELDLSG EMDLGTYYAD LADGLVLEP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9872040.0JN987204.1 Triticum aestivum AP2 domain CBF protein (CBFIIId) mRNA, CBFIIId-16.3 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167758.11e-110dehydration-responsive element-binding protein 1H-like
SwissprotA2Z3891e-54DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLK9M7D81e-147K9M7D8_WHEAT; AP2 domain CBF protein
STRINGTraes_5BL_5299B6B33.11e-149(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.17e-30dehydration response element B1A
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]