PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_5117B3E2A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 261aa MW: 28917.1 Da PI: 7.1165 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.7 | 1.4e-13 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g Traes_5BL_5117B3E2A.2 25 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 75 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-9 | 25 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-17 | 25 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.34E-26 | 25 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-16 | 26 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.252 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-33 | 26 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-7 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-7 | 65 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY IYLGLFDSEV 60 EAARAYDRAA IRFNGREAVT NFESSSYNGD APPDAENEAI VDADALDLDL RMSQPTAHDP 120 KRDNIVAGLQ LTFDSPESST TMLSSQPMSS SSSQWPVHQH GTAVPPQQHQ RLYPSACHGF 180 YPNVQVQVQE RPMEARPPEP PSCFPGWGWQ AQATPPGSSH SPLLYAAASS GFSTAAGAHP 240 APPPPSYPDH HRFYFPRPPD N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB697002 | 0.0 | AB697002.1 Triticum aestivum q mRNA for transcription factor WAP2D, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154436.1 | 1e-153 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | Q84TB5 | 1e-103 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A3B6LWJ2 | 0.0 | A0A3B6LWJ2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UTP9 | 0.0 | A0A446UTP9_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_5117B3E2A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 7e-50 | related to AP2.7 |
Publications ? help Back to Top | |||
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