PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4D4B8A841.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 726aa    MW: 80606.7 Da    PI: 6.1927
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4D4B8A841.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.35.8e-14181259190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e+GF +r  ks+++ + g   +++ +C ++gk++   k+           r++C+a +++ +++d+ w+vt+ ++ HnH+
  Traes_5BL_4D4B8A841.1 181 DFYNLYSWEMGFGIRYGKSRRNAKGG-KCMQEITCVNSGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHA 257
                            6*********************8888.66789**********98877..........9*****************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_5BL_4D4B8A841.1 258 FS 259
                            86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-10181259IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MEFSVEEEPR SGSPLALGLG EDAMEAVRRA FPGQDFAIDV VNRAFGRRNP EERSQQDSSA  60
CGISGACTSE KPVDLEQAEN AGKSCAQQDP SASEMQLRSQ EAEQAGQRCD APPAPADVGA  120
EAGGGWNRRV RRGRIPDERE PDAQRVSALE KALTGFAERQ TDVVVNPTVG TCFDSITEAY  180
DFYNLYSWEM GFGIRYGKSR RNAKGGKCMQ EITCVNSGKP NMGGKSRRCE CTALIRLLRT  240
DDNGWYVTQH RKVHNHAFST TYGNKVHWPS HKHLDKYTRD LVRQLRHNNV NLGVYDTIAS  300
FFGRMENVPF SKRSIRTLCG EVIREQADGD ARKTMETAVA SGERPENHTG EETTFNCLDL  360
ASTTLGSPNT PVDPLRYPEQ DDPHSNAEAG RLADLLLAFG DCHLVLKSCT YDDLINSNGT  420
MSGLEEAVKA VTPHLQQGIF GDLWSRAHNS GGVVSAQVLT IKDLFRFTRW LTTTTGQHNL  480
RCVQQRVKLV NSGKAVLEPE QIALLHLYQA ENDEYSVKMN KLQGERDAKI AHYMAKIDEA  540
RKSFEVSIQA AKQHYPVSAS YVALDSNELR GQCWTMYLTQ CRKEAKDLNA KASNIVEKYG  600
PEVIQRHLFE FCSQETNRQA LLKYAQTKVN KLKEAGGARE DTLHDYMTLL EIEKAYALLA  660
AEEQIANGPD TCGGSEDADH GNRNNTIARG EAAEGARGDG HDGGEGASEG PPRQKRQRND  720
QDYVWW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588740.0AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188421.10.0uncharacterized protein LOC109774115
TrEMBLA0A446U2S50.0A0A446U2S5_TRITD; Uncharacterized protein
STRINGTraes_5BL_4D4B8A841.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.18e-10FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]