PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_420974D47.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 401aa    MW: 43769 Da    PI: 7.1276
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_420974D47.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.21.9e-50211491129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee+++ yL +k  + ++   +++ evd++++eP+dLp k++ +ekewyfF+++d ky+tg+r+nratk+gyWkatgk
  Traes_5BL_420974D47.1  21 LPPGFRFHPTDEEIITSYLLRKFLDPSFVS-RAVGEVDLNSCEPRDLPGKANMGEKEWYFFVHKDLKYPTGSRANRATKEGYWKATGK 107
                            79*************************888.88***************99999*********************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            d+e+++   +elvg+kktLvfy+grap+g k++Wvmhe+rle
  Traes_5BL_420974D47.1 108 DREIFKPrARELVGMKKTLVFYTGRAPRGAKSEWVMHEFRLE 149
                            *****9867788***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5818172IPR003441NAC domain
PROSITE profilePS5100556.52421172IPR003441NAC domain
PfamPF023652.4E-2622148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVESIAATPS EEQGRGGGLS LPPGFRFHPT DEEIITSYLL RKFLDPSFVS RAVGEVDLNS  60
CEPRDLPGKA NMGEKEWYFF VHKDLKYPTG SRANRATKEG YWKATGKDRE IFKPRARELV  120
GMKKTLVFYT GRAPRGAKSE WVMHEFRLEG KSRGQTMNNP KDEWVVCKVF NKKGEVKATR  180
AADVDAEYSA VTTPNASSVV DAGEGAGDFT DSMFTIDPLC YIPNSDEYTS NQLPTKTTAT  240
TTNSAPPPYN ADYYYPSVPT TAGSFNLMSN YSLTNVPSNA QTSTAMASSV PAISGSSWQH  300
MLMNTAPHGM MSRRSYDVNL HEQQAIMMRA LEGVVGAQNF GEPAKGLQTP SSRVTAGSVL  360
PQQGKLGSYD DGELPYGNYD LASAAMTGRP AAANNLGARF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481917315166NO APICAL MERISTEM PROTEIN
1ut4_B1e-481917315166NO APICAL MERISTEM PROTEIN
1ut7_A1e-481917315166NO APICAL MERISTEM PROTEIN
1ut7_B1e-481917315166NO APICAL MERISTEM PROTEIN
3swm_A1e-481917318169NAC domain-containing protein 19
3swm_B1e-481917318169NAC domain-containing protein 19
3swm_C1e-481917318169NAC domain-containing protein 19
3swm_D1e-481917318169NAC domain-containing protein 19
3swp_A1e-481917318169NAC domain-containing protein 19
3swp_B1e-481917318169NAC domain-containing protein 19
3swp_C1e-481917318169NAC domain-containing protein 19
3swp_D1e-481917318169NAC domain-containing protein 19
4dul_A1e-481917315166NAC domain-containing protein 19
4dul_B1e-481917315166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0275730.0HM027573.1 Triticum aestivum NAC transcription factor 8 (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166976.10.0NAC domain-containing protein 77-like
RefseqXP_020166977.10.0NAC domain-containing protein 77-like
SwissprotQ5CD172e-93NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A3B6LJM40.0A0A3B6LJM4_WHEAT; Uncharacterized protein
TrEMBLA0A446U3G10.0A0A446U3G1_TRITD; Uncharacterized protein
STRINGTraes_5BL_420974D47.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.19e-74NAC family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]