PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_199A847E4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 23956.2 Da PI: 12.1564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 8.1e-17 | 41 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ + g+Wv+e+r+p g k r +lg+f tae+Aa+a++aa ++l g Traes_5BL_199A847E4.1 41 LYRGVRRRGRVGQWVCEVRVP---GvKGSRLWLGTFTTAEMAARAHDAAVLALSG 92 69******************9...8777*********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-10 | 40 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-21 | 41 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-19 | 41 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.008 | 41 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-28 | 41 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-5 | 42 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-15 | 54 | 102 | No hit | No description |
PRINTS | PR00367 | 3.0E-5 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDVADAASKS GHQEQGHRTV SSEPPKRPAG RTKFRETRHP LYRGVRRRGR VGQWVCEVRV 60 PGVKGSRLWL GTFTTAEMAA RAHDAAVLAL SGRAACLNFA DSAWRMLPVL AAGSFGFGSA 120 REIKLAVSRR RRRVPAAAEY SSSRVSNGGA DRQPEQLSVL HVVRRPAGAR RGALVWRHGC 180 RVVLRQLGAG DARGAAGRQS EAGGRRADGR RDTDAAMELF V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF028781 | 0.0 | EF028781.1 Triticum aestivum CBFIVd-B4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167760.1 | 3e-78 | dehydration-responsive element-binding protein 1B-like | ||||
TrEMBL | A0A3B6LQM2 | 1e-154 | A0A3B6LQM2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_199A847E4.1 | 1e-154 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 7e-27 | dehydration response element B1A |
Publications ? help Back to Top | |||
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