PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_07C33038A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 192aa    MW: 20280.9 Da    PI: 10.7601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_07C33038A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-052346629
                           HHHHHHHHHHHHHHHHHHHCTSCC CS
                    HLH  6 nerErrRRdriNsafeeLrellPk 29
                           + +Er+RR+++N  + +L +l+  
  Traes_5BL_07C33038A.1 23 KTVERNRRNQMNALYYRLDTLVRA 46
                           679****************99965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-72295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-622103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAMPPPPPPP FHPATAGGKP ERKTVERNRR NQMNALYYRL DTLVRAGGAA PSPAPAAATR  60
PDRLGEAAAY ISQTAERVER LKDRKRELTA ARAASTTQLG SGSGSSSGAA TISVEVQHLG  120
SGMHGILVTG APPSDGSMFH RAVRAVEEAG GEVQNAHFSV VGARAVYTIH TLVGEQQGSI  180
ERVVQRLKET VR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200617.11e-104uncharacterized protein LOC109786456
TrEMBLA0A3B6LWH91e-134A0A3B6LWH9_WHEAT; Uncharacterized protein
STRINGTraes_5BL_07C33038A.11e-135(Triticum aestivum)
STRINGTraes_5BL_DBF482F4B.11e-135(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-17bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]