PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_B5962A71D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 588aa    MW: 64417.4 Da    PI: 5.8811
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_B5962A71D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.5e-136654399
                           S-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                     B3 43 grsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                           g+ W++++ +  rk+++r +l +GW++F ++n L+ gD+++F+l+++ +e +  v+++rk
  Traes_5AS_B5962A71D.2  6 GKIWNINMLFhdRKYPKRWYLIGGWSKFISDNSLRLGDICLFELKKDeKELTVIVHLLRK 65
                           899*****9999******99999**********************998999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.183166IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-13470IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-10665IPR003340B3 DNA binding domain
CDDcd100171.34E-11661No hitNo description
Gene3DG3DSA:2.40.330.107.7E-11660IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MFQYMGKIWN INMLFHDRKY PKRWYLIGGW SKFISDNSLR LGDICLFELK KDEKELTVIV  60
HLLRKESIDH PSGVSPVLDS NYVRASTMIA STVRVGEEPD DEEETASSGR EEQGFDDEPI  120
EHNYSEGASK AHMPTAPCSE SNVSGISLSP EAREQAAGCS NKSFATEFPN KPSSTMEHNR  180
IIHTDRAAAS EVIGLSDYRI HNSCDSIDSQ GGESLAVQQQ SSPSPGIGNS VNLDSSSCDH  240
RSAEHVEGES DVALQSSVRV TGQQVGDAEK EVNASGGENT LADLPHLEPQ NVAAVPTQAA  300
LPMPKEKTDT QTNRSAQSDV AQAQPPQGEV EQAGLSGVAT PQPLQPEMQA SLSREVEAPA  360
NVVIQSAQPL VLEMQPSTPL SNIPLERTHP NRGQSSRQPE AAAGSAQPAQ LFPAPSMMFN  420
HPPIGDEPLK NELHRLRLHI DSLDKIYELK QSQLQTECSQ EIEKIKQKYD LLLEERDSVH  480
LEQMKTLDGL LEKVVFHQSL AADFRAKFIS SSAAQAKAYS RPIHQTPQAS QQAPMRPPGV  540
TSTSPPAAWS SAGRPVVPGG AQPSXHQHQH HHRRLVRHCH FHKWSGLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151567.10.0uncharacterized protein LOC109736772
TrEMBLA0A3B6KBH70.0A0A3B6KBH7_WHEAT; Uncharacterized protein
TrEMBLA0A446SSN30.0A0A446SSN3_TRITD; Uncharacterized protein
STRINGTraes_5AS_B5962A71D.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-06B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]