PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_3D6AA43B5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 402aa    MW: 46092.3 Da    PI: 6.8178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_3D6AA43B5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.5e-14871681399
                            TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            ++r+++p k a+++ g++++++   tl+ +sg++W+v +  +k  ++ ++  GW eF++a++L+e+D + Fk +g+ +f   v +f++
  Traes_5AS_3D6AA43B5.1  87 QQRISIPEKIANNFiGKITNGG--FTLKAPSGEEWRVGV--EKIADELFFMPGWVEFARAHELQENDLLFFKCSGNGSF--DVLIFDA 168
                            5689*******77787777776..8999***********..******99999********************9888777..8888875 PP
2B349.57.5e-163063931199
                            HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                     B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                             +++ l++p kfa++h +g   ++ +l l+  + ++W +k+ y ++  r +  + W++Fv++n+L+eg ++vF+l++  ++++++v+v
  Traes_5AS_3D6AA43B5.1 306 RTNNFLIVPSKFAADHlEGR--SHEMLLLRPNRKEKWYLKY-YHGSVTRGFNCRRWSKFVRDNRLREGYVCVFELMKGaRKATMTVHV 390
                            456789**********7555..444788888999*******.6666666556679*******************99877********* PP

                            E-S CS
                     B3  97 frk 99 
                            +rk
  Traes_5AS_3D6AA43B5.1 391 LRK 393
                            997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1974171IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.57675169IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-1877171IPR015300DNA-binding pseudobarrel domain
CDDcd100176.07E-1677167No hitNo description
SMARTSM010192.1E-978169IPR003340B3 DNA binding domain
PfamPF023624.7E-1287167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-18287392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-18288392IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-16293392No hitNo description
PROSITE profilePS5086311.914296394IPR003340B3 DNA binding domain
SMARTSM010191.9E-11299394IPR003340B3 DNA binding domain
PfamPF023622.0E-14305393IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MYAHTLLSLH CIHGFGALAT DEASCGFGVL ATDEASCMSA MVVAGEMMVD EKGRCGRCRE  60
WQEHYYWEHM EDVSKISFSK LMTGDFQQRI SIPEKIANNF IGKITNGGFT LKAPSGEEWR  120
VGVEKIADEL FFMPGWVEFA RAHELQENDL LFFKCSGNGS FDVLIFDAGG CEKVSCFFAS  180
KKGTNMRKQF DNIVCQHGEE HCILSDSNDT SMPLSQLIRS THKASTSKKP RKETESPKNN  240
NYFLKNEAVE EEEESDDHHT ESDYYYYSRF ANCLSEDDRE EIFGLASIQL GNPVYVAVLQ  300
KTHVRRTNNF LIVPSKFAAD HLEGRSHEML LLRPNRKEKW YLKYYHGSVT RGFNCRRWSK  360
FVRDNRLREG YVCVFELMKG ARKATMTVHV LRKVDDKFVL LG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193657.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-146Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A446SQS80.0A0A446SQS8_TRITD; Uncharacterized protein
STRINGTraes_5AS_3D6AA43B5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-30B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]