PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AS_0ADC996F5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GATA | ||||||||
Protein Properties | Length: 324aa MW: 37270.8 Da PI: 7.2583 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.3 | 1.8e-17 | 246 | 280 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + +Tp+WR+gp g+ktLCnaCG++y++ +l Traes_5AS_0ADC996F5.1 246 CTHCLSHTTPQWRSGPLGPKTLCNACGVRYKSGRL 280 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.2E-4 | 127 | 180 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-4 | 132 | 166 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 8.629 | 136 | 165 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.6E-16 | 240 | 294 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.543 | 240 | 276 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.66E-14 | 244 | 304 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-13 | 245 | 278 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.68E-13 | 245 | 292 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 246 | 271 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.5E-15 | 246 | 280 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
QFCLKGSSGL ESEDSSTEWL SIYLEDCLTN PASYPVSEEQ ASVNPNLPHP SSSNPRRKKR 60 SLASVIRDSD EEYFLIVEPP LLLDQKHWLA ESELILPKKD KDQELVQKLE QEHEEEYKPY 120 TVQFKQEQAV MRCSICLSNS NQTPQQWQGG PSGALLCNTC SLRLKAGNGF IKLERCGQQV 180 DEEQDHGRGQ DKRKIKKTTY YGDDEEPPQE KRRIKKTSFV DEQGKRRTKK TYVNEEVPLE 240 EPVKRCTHCL SHTTPQWRSG PLGPKTLCNA CGVRYKSGRL LPEYRPANSP TFVSFMHSNS 300 HKKVMQMRKS VENEHEHEYS HSDM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00415 | DAP | Transfer from AT3G60530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC256281 | 0.0 | AC256281.1 Hordeum vulgare clone HV_Mba475-H03, complete sequence. | |||
GenBank | AK251711 | 0.0 | AK251711.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124o21, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174280.1 | 0.0 | GATA zinc finger domain-containing protein 10-like | ||||
TrEMBL | A0A3B6MK50 | 0.0 | A0A3B6MK50_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5AS_0ADC996F5.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 7e-36 | GATA transcription factor 4 |
Publications ? help Back to Top | |||
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