PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_F6FD8FEFF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 147aa MW: 16291.8 Da PI: 5.9421 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 2 | 41 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+ri +++ L+el+P+ K + a +L + +Y+k L Traes_5AL_F6FD8FEFF.1 2 QLRRERIAERMRALQELVPNT-----NKTDRAVMLDEILDYVKFL 41 56******************7.....59**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.417 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-4 | 2 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-11 | 3 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.39E-7 | 4 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MQLRRERIAE RMRALQELVP NTNKTDRAVM LDEILDYVKF LRLQVKVLSM SRLGGAGAVA 60 QLVSDIPLSV KGEASDGGSK QQVWEKWSTD GTEKQVAKLM DEDIGAAMQF LQSKALCMMP 120 VSLAMAIYDT QHSQDGQPVK PEPNNTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068388 | 1e-143 | AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence. | |||
GenBank | AK104412 | 1e-143 | AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191801.1 | 1e-102 | transcription factor UNE12-like | ||||
Swissprot | O22768 | 2e-60 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A446UR42 | 1e-104 | A0A446UR42_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_F6FD8FEFF.1 | 1e-105 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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