PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_A5234EC05.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91153.4 Da    PI: 5.5604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_A5234EC05.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.39.6e-1240821856
                           HHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
               Homeobox 18 lFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                            ++ +++p+ ++r++L +++    +++ rq+kvWFqNrR ++k
  Traes_5AL_A5234EC05.1 40 XYADCPKPTSSRRQQLLRECpilaNIEARQIKVWFQNRRCRDK 82
                           58899***********************************998 PP
2START154.49.7e-491633702204
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W +++++ e+  v+  + 
  Traes_5AL_A5234EC05.1 163 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRSLEVFTVLPGAn 249
                            789*******************************************************9999988888.***************9878 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++l+a+++lvp Rdf+++Ry+   ++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h +
  Traes_5AL_A5234EC05.1 250 gGTIELVYTQLYAPTTLVPaRDFWTLRYTTIVEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLE 337
                            8********************************************9999999898899****************************** PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204
                             +++ ++++lr+l++s+++ ++k+++a+l++ +
  Traes_5AL_A5234EC05.1 338 FEAWNIPEVLRPLYESSRVVAQKMTTAALRHIR 370
                            *****************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.8722084IPR001356Homeobox domain
SMARTSM003890.00212288IPR001356Homeobox domain
PfamPF000463.2E-94082IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-114082IPR009057Homeodomain-like
SuperFamilySSF466891.33E-84184IPR009057Homeodomain-like
CDDcd000862.90E-94182No hitNo description
PROSITE profilePS5084826.466153381IPR002913START domain
CDDcd088751.17E-71157373No hitNo description
Gene3DG3DSA:3.30.530.203.9E-19162348IPR023393START-like domain
SuperFamilySSF559613.85E-36162374No hitNo description
SMARTSM002341.5E-36162372IPR002913START domain
PfamPF018522.0E-46163370IPR002913START domain
PfamPF086701.6E-46693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAAAMAMRGG SSDGGGSDRG AGMDSGXXXX XXXXXXXXXX YADCPKPTSS RRQQLLRECP  60
ILANIEARQI KVWFQNRRCR DKLRKESSRL ESVNRKVSAM NKLLMEENER LQKQVSQLVH  120
ENAQVRQQLQ NTSMANDASC ESNVTAPQNP IRDASNPSGL LSIAEETLTE FLSKATGTAI  180
EWVQMPGMKP GPDSVGIVAI SHGCRGVAAR ACGLVNLEPT KVVEILKDRP SWFRDCRSLE  240
VFTVLPGANG GTIELVYTQL YAPTTLVPAR DFWTLRYTTI VEDGSLVVCE RSLSGSGGGP  300
SAASAQQFVR AEMLPSGYLV RPCDGGGSIV HIVDHLEFEA WNIPEVLRPL YESSRVVAQK  360
MTTAALRHIR QIAQETSGEV VYALGRQPAV LRTFSQRLSR GFNDAISGFN DDGWSIMAGD  420
GIEDVVVACN STKKIRSISN GVNAFEAPGG TICAKASMLL QSVPPAILVR FLREHRSEWA  480
DYSMDAYLAS ALKTSTCSFP GLRPMRFSGS QIIMPLAHTV ENEEILEVVR LEGQPLSHDE  540
VLLSRDIDML QLCTGIDEKS VGSSFQLVFA PIDDFPDDAP LISSGFRVIP LDMKTDVVSS  600
GRTLDLASSL EVGSTAAQAS GASSDDCNVR SVLTIAFQFP YELHLQDSVA AMARQYVRSI  660
VSAVQRVSIA ISPSQSGLNA GQRILSGLPE AATLARWICQ SYHYHLGVEL LTQSDVAGEA  720
LLKMLWHYQD AILCCSFKEV PVFTFANKAG LDMLETSLVA LQDLTLDKIF DEPGRKALFS  780
EISKLVEEGH VYLPSGVCMS GMGRHVSFDQ AVAWKVLGED SSVHCLALCF VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162053.10.0homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A453JC590.0A0A453JC59_AEGTS; Uncharacterized protein
STRINGTraes_5AL_A5234EC05.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]