PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_9BC38814C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 139aa MW: 15347.1 Da PI: 8.2448 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 82.3 | 5.3e-26 | 33 | 96 | 1 | 64 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv eL+a N +L++el++lkk ++++++e++ Traes_5AL_9BC38814C.1 33 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENK 96 89*********************************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-18 | 25 | 92 | No hit | No description |
SMART | SM00338 | 1.0E-21 | 33 | 97 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-23 | 33 | 96 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.059 | 35 | 98 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-12 | 36 | 91 | No hit | No description |
CDD | cd14702 | 2.83E-16 | 38 | 88 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 40 | 55 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MDPLSASPSS LVQGEVNAAA SSQSNASLSQ MDERELKRER RKQSNRESAR RSRLRKQQEC 60 EELAQKVSEL TAANGTLRSE LDQLKKDCKT METENKKLMG KILSHDDKMQ QSEGPSVVTT 120 LSIQVEAPEP HQGGHGKAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 55 | RRSRLRK |
2 | 49 | 56 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00665 | SELEX | 26531826 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | WHTEMGCF13 | 0.0 | M62893.1 Triticum aestivum DNA binding protein (EmBP-1b) mRNA, complete cds. | |||
GenBank | WHTHBP1A1 | 0.0 | D12919.2 Triticum aestivum mRNA for transcription factor HBP-1a(1), partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175793.1 | 3e-80 | DNA-binding protein EMBP-1 | ||||
Swissprot | P25032 | 1e-96 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A3B6KRS4 | 3e-94 | A0A3B6KRS4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6KS12 | 3e-94 | A0A3B6KS12_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6KSH3 | 3e-94 | A0A3B6KSH3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5AL_9BC38814C.1 | 7e-96 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 7e-23 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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