PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_8954A60B6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 349aa    MW: 40817.4 Da    PI: 9.5294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_8954A60B6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08149189346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +WT+eE  ++ + v++ G++ Wk+ ++++g  +++ ++k+ w+ 
  Traes_5AL_8954A60B6.1 149 KWTQEEYHKIRQFVEKNGTD-WKALSEELG--KSEIHVKDTWRR 189
                            8*******************.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717273144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-474137IPR009057Homeodomain-like
PROSITE profilePS500904.11276129IPR017877Myb-like domain
PROSITE profilePS512949.514144195IPR017930Myb domain
SMARTSM007170.054146193IPR001005SANT/Myb domain
SuperFamilySSF466894.05E-9148208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-9149201IPR009057Homeodomain-like
PfamPF139212.7E-10150208No hitNo description
PROSITE profilePS500907.886192260IPR017877Myb-like domain
SMARTSM007170.0031196262IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-8202261IPR009057Homeodomain-like
SuperFamilySSF466891.06E-6240318IPR009057Homeodomain-like
PROSITE profilePS500907.619262315IPR017877Myb-like domain
SMARTSM007172.3266317IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEVIKKANAD GKGDKKKKKR KEGIEGGKRE KEKAARSKNK GRRVTFADSV VVFSIEGRDD  60
EEGGSSGGSE LVHGQRFTLE EEATLMEAMR DYAEMKQLGE EGLEMIRRCR KYPELKGCWS  120
DIGKSLPHRP HEAIYKRARI LLTRSDERKW TQEEYHKIRQ FVEKNGTDWK ALSEELGKSE  180
IHVKDTWRRI KPKNLKKGRW TQDEHQNLFD LVNLDLRLKA HQEKNPGHRK LRDNISWEAI  240
SDKLTSRNHK NCCLKWYVTL ASPLVKQGVW ADIDDYRLVE ALQKVDAVCI EDVDWESLLG  300
HRSGEVCRQR WNQMVRGIGS HRQKTFIEQV EVLSKRYCPE MIDYRESEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420KKKKKRK
21520KKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754923.10.0cyclin-D-binding Myb-like transcription factor 1 isoform X1
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A3B6KEW60.0A0A3B6KEW6_WHEAT; Uncharacterized protein
TrEMBLA0A446SYM30.0A0A446SYM3_TRITD; Uncharacterized protein
STRINGTraes_5AL_8954A60B6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-102MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]