PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_6F77CFB03.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 409aa    MW: 44379.7 Da    PI: 8.2394
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_6F77CFB03.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32125179155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl
  Traes_5AL_6F77CFB03.2 125 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 179
                            58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.814122182IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-31124180IPR009057Homeodomain-like
SuperFamilySSF466893.58E-17124179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24126180IPR006447Myb domain, plants
PfamPF002496.8E-9127178IPR001005SANT/Myb domain
PfamPF143791.5E-23211257IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
LKIAANQFVL GRFGLKSGPS EPVAQTEKVG GESRGILSPL LAGNQEIANP RIFPHNQSTP  60
PRQVPILPAE LHSGRXXXXX XXXXXXXXXX XRIRTARPPW QQMESGENNM GSNDGPNSKA  120
SLAARQRLRW TDELHEQFVE AVTQLGGPDR ATPKGVLRIM GTPGLTIYHV KSHLQKYRLA  180
KYIPDSSADG NKADNKDPGD SLAGLDGSSG MQISEALKLQ MEVQKRLHEQ LEVQRQLQLR  240
IEAQGKYLKK IIEEQQRFGG GGIKSETPGA GATVTASSDQ FPDSERTDPS TPAPTSESAS  300
QGAAFKRDSG SQTEAIKSPC HDEPLLTADS NCHPGSPTLS PKHERAAKRQ RGSEAEFPEA  360
ELSLPQXRVE LGAGVPAMCG ALLLGSLASR QLHFGSILEW CHLRGYVVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-23125182158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-23125182158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-23125182158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-23125182158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657330.0AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13.
GenBankAK3738550.0AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180683.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180688.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180697.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180704.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180710.10.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW09e-89PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A453KKI70.0A0A453KKI7_AEGTS; Uncharacterized protein
STRINGTraes_5AL_6F77CFB03.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.18e-60G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]