PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_206C0CE33.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 442aa    MW: 50152 Da    PI: 6.7198
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_206C0CE33.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.21.2e-24118214186
               trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                            +Wt+++v++Li+a ++++e+ +++            kk++W+++sk++ erg+++sp+qC++k+++lnkryk+++++ +++ t++++ 
  Traes_5AL_206C0CE33.2 118 KWTDSMVKLLITAASYTGEDPGADLgcgrrncamvHKKGKWKAISKVIGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtTCKVVA 205
                            7*********************8633466677888**********************************************77***** PP

               trihelix  78 tcpyfdqle 86 
                            + +++d+++
  Traes_5AL_206C0CE33.2 206 NPALLDRMD 214
                            *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-19116240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEGNNLPPGN FMQGATYGSS DLHRNPMQMH GPSSGNQGFN HSQIPGKFPM PMNQVTDSDH  60
LSEFQFRGQR KADHHQVHHH HYHKKDSMSD DEEHGLNEDT TDSHSSKGKK GSAWQRMKWT  120
DSMVKLLITA ASYTGEDPGA DLGCGRRNCA MVHKKGKWKA ISKVIGERGC NVSPQQCEDK  180
FNDLNKRYKR LTDILGRGTT CKVVANPALL DRMDNLSDKL KDDARKILSS RHLFYEEMCS  240
YHNNNRISLP EDLPLQRSLQ FALRCKEEND MMRGASGDAD EDDQSSDSDY EEDNDEDHHV  300
AHSNKGGLPM QKKMRYTADH EDAGFGNSLS AHECSQRSNP HGIALDINKV VPDGTSLALT  360
QKGLVLQSAE LEKQCLKIEN EALELAEQRL KWELSSKIKD KELERMRSDN EHMKIEIKRL  420
ELEVRRKELE LELKLKGNVN HS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196126.10.0uncharacterized protein LOC109781950
RefseqXP_020196127.10.0uncharacterized protein LOC109781950
RefseqXP_020196128.10.0uncharacterized protein LOC109781950
TrEMBLA0A3B6KG460.0A0A3B6KG46_WHEAT; SAB
STRINGTraes_5AL_206C0CE33.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-97sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]