PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_0A37969AE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 313aa    MW: 35040.5 Da    PI: 5.1107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_0A37969AE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.4e-1023951798
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                           ++p + +++++++      +++  ++ +s  v    + + +++vl++GW +Fv ++ ++++Df++F  +g  e++l+v v++
  Traes_5AL_0A37969AE.2 23 YIPLRLVDQFKEV------VKIVALD-KSIYVVGAKKHNEDQIVLQSGWDRFVTDQCIQQNDFLIFIIQG--ETRLKVLVLD 95
                           5555555555433......3333333.455555545667777*************************766..5556888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-12298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-8495No hitNo description
Gene3DG3DSA:2.40.330.109.5E-11498IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0045697IPR003340B3 DNA binding domain
PROSITE profilePS508638.5154697IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-7206305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-9209303IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-7212309No hitNo description
SMARTSM010190.047214309IPR003340B3 DNA binding domain
PROSITE profilePS508638.261214313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
SGFPLFVAAR DESNVSLIDC HVYIPLRLVD QFKEVVKIVA LDKSIYVVGA KKHNEDQIVL  60
QSGWDRFVTD QCIQQNDFLI FIIQGETRLK VLVLDPSGSE KTFAMGNSSN AQEKPPLPPT  120
VTNQSSEDNE LTDQSSDNEL TDQSSDNELT DLSSDDYEVL GTDTTTSRRE QRPLRSCRAK  180
AEKMGSTSCP STKSDHRHKA GNSNEAIGSE FPVYVKVMTA DGVSKPIQLC FSMEYASACR  240
LPLEQTPVLL RLEGSDMQWR SSLMVQQSNN VRRISSFWKD IVSQAGMKKG DILLVELADR  300
SSKRLRMIIE HFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170062.10.0B3 domain-containing protein Os12g0591400-like isoform X1
TrEMBLA0A3B6KL270.0A0A3B6KL27_WHEAT; Uncharacterized protein
STRINGTraes_5AL_0A37969AE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1636348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-09B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]