PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DS_FEAA10316.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 526aa MW: 58148.6 Da PI: 12.3636

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_FEAA10316.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	192.2	3.3e-59	308	526	155	374
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 + +l +t rL++fA+ lgv+fef + + + +++l+ ++++v+p+E++aVn++lql++ll ++++++ +++L+l ksl P vv++ Traes_4DS_FEAA10316.1 308 AASLAATSARLRDFAQLLGVDFEFVP-LLRPVHELDRSDFSVEPDEVVAVNFMLQLYHLL---GDSDEPVRRLLRLAKSLGPAVVTLG 391 578999******************.599**************************...66666777************* PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvpl 329 e e+++n++ F++rf++al+yy a+f+sl++ ++r+se+r+++Er ++g++i+ +v ega+r+ r+ ++W++ +e +GF+pv+l Traes_4DS_FEAA10316.1 392 EYEVSLNRAGFVDRFASALSYYRAVFESLDVAMARDSEDRATLERCMFGERIRRAVGpPEGADRTDRMAGSAEWQALMEWCGFEPVRL 479 ****************************************************83699*********************** PP GRAS 330 sekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 s++a++qa+lll ++ + y++ + +++ l W++rpL++vSaWr Traes_4DS_FEAA10316.1 480 SNYAESQAELLLWDYDaKYKYSLVQLPPAFLsLAWEKRPLLTVSAWR 526 ************8888999999998888************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.094	260	504	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-56	308	526	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
SSSSSSTTSS SSGTTTTTTT SSRRPCRCRP PPRPRTRRSR ARCRSGPRGP RRGPRPRTSS 60 LTSSGRPPPT PCSPTSPPAR TSTPTCGWRA SSGTPPCSRT RTSTASSSPP RRRPARPRLR 120 PRRRPSRGTR MRRPRSPRLP PRRRRRVLLR AQPTRPAPPP SSSPSSPAPA PRWPAQASPP 180 RSSPRSAPRP PSPGTPRSAW PSTSPTLSLA ASRAAARRPS RRRPTRGSPP TRSRSATRRS 240 TTPAPTPSSR TSPPTRPSWR PRARRPRSTS LTSASCRASS GXXXXXXXXX XXXXXXXXXX 300 XXLGPQPAAS LAATSARLRD FAQLLGVDFE FVPLLRPVHE LDRSDFSVEP DEVVAVNFML 360 QLYHLLGDSD EPVRRLLRLA KSLGPAVVTL GEYEVSLNRA GFVDRFASAL SYYRAVFESL 420 DVAMARDSED RATLERCMFG ERIRRAVGPP EGADRTDRMA GSAEWQALME WCGFEPVRLS 480 NYAESQAELL LWDYDAKYKY SLVQLPPAFL SLAWEKRPLL TVSAWR

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

SSSSSSTTSS SSGTTTTTTT SSRRPCRCRP PPRPRTRRSR ARCRSGPRGP RRGPRPRTSS  60
LTSSGRPPPT PCSPTSPPAR TSTPTCGWRA SSGTPPCSRT RTSTASSSPP RRRPARPRLR  120
PRRRPSRGTR MRRPRSPRLP PRRRRRVLLR AQPTRPAPPP SSSPSSPAPA PRWPAQASPP  180
RSSPRSAPRP PSPGTPRSAW PSTSPTLSLA ASRAAARRPS RRRPTRGSPP TRSRSATRRS  240
TTPAPTPSSR TSPPTRPSWR PRARRPRSTS LTSASCRASS GXXXXXXXXX XXXXXXXXXX  300
XXLGPQPAAS LAATSARLRD FAQLLGVDFE FVPLLRPVHE LDRSDFSVEP DEVVAVNFML  360
QLYHLLGDSD EPVRRLLRLA KSLGPAVVTL GEYEVSLNRA GFVDRFASAL SYYRAVFESL  420
DVAMARDSED RATLERCMFG ERIRRAVGPP EGADRTDRMA GSAEWQALME WCGFEPVRLS  480
NYAESQAELL LWDYDAKYKY SLVQLPPAFL SLAWEKRPLL TVSAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-139	303	526	152	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	54	PRRGPR
2	137	146	RLPPRRRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353654	0.0	AK353654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001N07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Traes_4DS_FEAA10316.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8569	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	3e-71	GRAS family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]