PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4DS_F6E1A4F88.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 30056.4 Da PI: 10.1232 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 23 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W++Ia+++ gR++k+c++rw++ Traes_4DS_F6E1A4F88.1 23 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 68 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 61.6 | 1.6e-19 | 76 | 119 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ + Traes_4DS_F6E1A4F88.1 76 RPFTEEEEERLLAAHRVHGNK-WALIARHFP-GRTDNAVKNHWHVV 119 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.741 | 18 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 22 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 22 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-17 | 23 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-27 | 24 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.74E-14 | 26 | 67 | No hit | No description |
PROSITE profile | PS51294 | 28.456 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-22 | 77 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-8 | 86 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MAASSSTTNT SEGGAKPSSL CPRGHWRPGE DEKLRQLVEK YGPQNWNSIA EKLEGRSGKS 60 CRLRWFNQLD PRINKRPFTE EEEERLLAAH RVHGNKWALI ARHFPGRTDN AVKNHWHVVR 120 ARRSRERCRL FAKAASSTFP SYSYSGGAQL DFAGASAGSF CFGFSNPSGG GFFGSPPAAA 180 AVAPSSTPVM FNGYGASGNK SLLSRYSSYL EGGKQPAAPS SLSIAFSSPP SREALALDGR 240 GSPDHHRRKD YHVDGEEPLK TKDAPPFIDF LGVGVSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 23 | 123 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF951910 | 0.0 | JF951910.1 Triticum aestivum clone TaMYB27 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156227.1 | 0.0 | transcription factor RAX1-like | ||||
TrEMBL | A0A3B6JEL7 | 0.0 | A0A3B6JEL7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453HKR2 | 0.0 | A0A453HKR2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_F6E1A4F88.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17950.1 | 8e-58 | myb domain protein 52 |
Publications ? help Back to Top | |||
---|---|---|---|
|