PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_BD48EEAD8.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 440aa    MW: 50328.2 Da    PI: 7.3369
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_BD48EEAD8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.62.1e-25121216186
               trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                            +Wt ++v++Li+a ++++e+ ++++         +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++ ++++
  Traes_4DS_BD48EEAD8.2 121 KWTGSMVKLLITAASYTGEDPGADQgrrrniaivQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGtACSVVEN 208
                            7*********************987778889999**********************************************559999** PP

               trihelix  79 cpyfdqle 86 
                             +++d+++
  Traes_4DS_BD48EEAD8.2 209 PALLDSMH 216
                            ****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-18119242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEGSNLPTGN MMQGIPYSGL NVHGNSMQMH SSSSGKQLFN QSQMLGSFAM PINRATAPDN  60
PGFQFGEHEK KDRHHHHQQQ QQHSHYSKNS ISDEEEHDMT EDVTDTQNDK GKKGSAWHRM  120
KWTGSMVKLL ITAASYTGED PGADQGRRRN IAIVQKKGKW KAISKVMGER GCSVSPQQCE  180
DKFNDLNKRY KRLTDILGRG TACSVVENPA LLDSMHHLSD KMKEDARKIL NSKHLFYEQM  240
CSYHNNNRVN LPEDLALQHS LQVALRCKEE HDLRRDASAD PEEGEQSADS DYEEHDKEHQ  300
TVHTNLRDSS MNKRMCHAVD HGDVGFVTSS SNGVSGRFNP HDITLDINNA IPGGANLSFV  360
RKDLTSQQVE LQKHRLQAQE QKLEVAKQRL KWERFRMKKD REIERMTLEN EQMMLQHKRL  420
ELQLRHNELE LELKGNANHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669360.0AK366936.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2048K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174820.10.0uncharacterized protein LOC109760399
TrEMBLA0A3B6JEW30.0A0A3B6JEW3_WHEAT; Uncharacterized protein
TrEMBLA0A453HMJ30.0A0A453HMJ3_AEGTS; Uncharacterized protein
TrEMBLN1R4850.0N1R485_AEGTA; Uncharacterized protein
STRINGEMT200230.0(Aegilops tauschii)
STRINGTraes_4DS_BD48EEAD8.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-98sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]